SRR3549363_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549363_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	33965
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	280	0.8243780362137495	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	125	0.3680259090239953	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	59	0.17370822905932579	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	41	0.12071249815987047	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	37	0.1089356690711026	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	37	0.1089356690711026	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGAT	20	6.9368887E-4	45.0	5
GGATGGC	25	3.8111324E-5	45.0	8
GGATGGA	20	6.9368887E-4	45.0	8
GGATGAC	25	3.8111324E-5	45.0	8
TACGGGA	20	6.9368887E-4	45.0	4
GCAGGGA	40	6.4846972E-9	45.0	4
GATTGGG	20	6.9368887E-4	45.0	3
ATAATGG	20	6.9368887E-4	45.0	2
CGAGGGA	20	6.9368887E-4	45.0	4
GATCTTT	20	6.9368887E-4	45.0	9
AGCGGGA	20	6.9368887E-4	45.0	4
CGGGATG	20	6.9368887E-4	45.0	6
CGGGACA	25	3.8111324E-5	45.0	6
TGTAGGG	50	2.0008883E-11	45.0	3
ACGGGAG	25	3.8111324E-5	45.0	5
CTAAAGC	20	6.9368887E-4	45.0	5
AAGGATG	40	6.4846972E-9	45.0	6
GTAGGGC	35	1.1660268E-7	45.0	4
ACTAGGA	20	6.9368887E-4	45.0	4
ACCTATG	25	3.8111324E-5	45.0	34