SRR3549359_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549359_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	77362
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1493	1.9298880587368474	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCG	293	0.37873891574674906	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTC	261	0.3373749386003464	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGC	149	0.19260101858793724	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	120	0.15511491429900984	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	91	0.11762881001008248	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTGCTAGTCGTATGCCGTCTTCT	83	0.1072878157234818	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	6.9925125E-4	45.0	1
ATGGGCG	20	6.9925125E-4	45.0	5
GCGACCA	35	1.192384E-7	45.0	11
GGGTCTC	40	6.673872E-9	45.0	8
GTGGGAC	20	6.9925125E-4	45.0	5
GCAAAGG	20	6.9925125E-4	45.0	2
TAAACCT	20	6.9925125E-4	45.0	29
ACACACC	20	6.9925125E-4	45.0	28
GCACGGG	20	6.9925125E-4	45.0	3
GGATCCA	35	1.192384E-7	45.0	8
TGTGCGG	20	6.9925125E-4	45.0	2
ACGGGGC	20	6.9925125E-4	45.0	5
CGTTATT	75	0.0	45.0	1
AACATAC	20	6.9925125E-4	45.0	16
CTACGGG	20	6.9925125E-4	45.0	3
GATATCT	20	6.9925125E-4	45.0	9
GGTATAC	20	6.9925125E-4	45.0	9
CGGGAGG	40	6.673872E-9	45.0	6
CATACGA	20	6.9925125E-4	45.0	18
TGGGCGA	40	6.673872E-9	45.0	6