SRR3549350_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549350_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	825553
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1817	0.22009489396804324	No Hit
AAGGAAAGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1813	0.2196103702609039	No Hit
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1753	0.21234251465381387	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1666	0.20180412402353332	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1351	0.16364788208631062	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1287	0.15589550277208125	No Hit
GCACAAAAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	865	0.10477825166888134	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAG	30	2.1647556E-6	45.000004	2
ACGTTAG	35	1.2113742E-7	45.000004	2
CGTTGAT	30	2.1647556E-6	45.000004	25
TACGGTA	40	6.8102963E-9	45.000004	1
CGACACT	20	7.032129E-4	45.000004	31
TGTGCGC	20	7.032129E-4	45.000004	32
TCGGCGA	30	2.1647556E-6	45.000004	11
ATCCGAA	30	2.1647556E-6	45.000004	1
CCGTAAG	20	7.032129E-4	45.000004	35
TACGCAA	30	2.1647556E-6	45.000004	1
TGCGATA	20	7.032129E-4	45.000004	1
TGCGAAG	120	0.0	45.000004	2
CGGGCAC	20	7.032129E-4	45.000004	6
TCATGCG	20	7.032129E-4	45.000004	14
GTCGTTT	40	6.8102963E-9	45.000004	9
TCCGTAA	20	7.032129E-4	45.000004	16
TCGTACT	20	7.032129E-4	45.000004	26
CGAGCCG	20	7.032129E-4	45.000004	30
CCGAATC	30	2.1647556E-6	45.000004	14
ATCGGCG	30	2.1647556E-6	45.000004	10