SRR3549348_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549348_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1419209
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16014	1.1283750314435717	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	2125	0.14973129398136567	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2017	0.14212142115784215	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	1970	0.13880971724390137	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTACG	20	7.0338463E-4	45.000004	11
CCGGTCA	20	7.0338463E-4	45.000004	31
ACACGAA	25	3.89127E-5	45.0	45
CGTTATT	1180	0.0	42.711864	1
CGTAAGG	275	0.0	42.545456	2
GACCCAC	465	0.0	42.096775	12
AACGGGC	145	0.0	41.896553	4
ACGGGCC	70	0.0	41.785713	5
CGTTTTT	6670	0.0	41.525486	1
TGGGCGA	380	0.0	40.855267	6
TAAGGGA	2540	0.0	40.74803	4
GGGCGAT	1515	0.0	40.544556	7
GCCGATT	50	1.0822987E-9	40.5	9
TACGCGG	50	1.0822987E-9	40.5	2
TATAGCG	50	1.0822987E-9	40.5	1
TAGCACG	45	1.9288564E-8	40.0	1
CCCGTAT	45	1.9288564E-8	40.0	45
GGCCGAT	220	0.0	39.886364	8
TTACGGG	525	0.0	39.428574	3
ACGAATG	80	0.0	39.375004	1