SRR3549344_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549344_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	875047
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1730	0.1977036662030725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAT	25	3.890039E-5	45.000004	21
CGCTAAT	25	3.890039E-5	45.000004	34
TTACGTA	25	3.890039E-5	45.000004	1
CTAGGCG	25	3.890039E-5	45.000004	5
TGCGTAA	50	2.1827873E-11	45.000004	1
GGTACCC	20	7.0323626E-4	45.0	12
GATCGGT	40	6.8121153E-9	45.0	10
GCGCGAA	55	1.8189894E-12	45.0	1
TACGCTA	20	7.0323626E-4	45.0	1
TCGCTTA	20	7.0323626E-4	45.0	1
TTGCGAA	80	0.0	45.0	1
ACGCTAG	45	3.8380676E-10	45.0	2
GATTCGA	20	7.0323626E-4	45.0	9
TATACGA	20	7.0323626E-4	45.0	1
TACCGGT	20	7.0323626E-4	45.0	39
GTCGAGA	30	2.1649048E-6	44.999996	1
CGCGAAG	65	0.0	44.999996	2
TGCGCAA	65	0.0	44.999996	1
AGGCGAT	625	0.0	44.640003	7
AGGACCG	360	0.0	43.75	7