SRR3549340_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549340_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	624329
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4088	0.654782975001962	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1018	0.16305505590802286	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	841	0.1347046188788283	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	757	0.12125017418700716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTC	40	6.8066583E-9	45.000004	6
CGGGTCC	30	2.1639025E-6	45.000004	6
GGTACCG	20	7.030807E-4	45.000004	9
TCGCAAA	20	7.030807E-4	45.000004	1
CGAACGG	20	7.030807E-4	45.000004	2
AGTCACG	20	7.030807E-4	45.000004	1
GTCGAAG	20	7.030807E-4	45.000004	1
GCGAAAG	40	6.8066583E-9	45.000004	1
AACCCAT	20	7.030807E-4	45.000004	38
GACGTAT	20	7.030807E-4	45.000004	9
CAATTGC	20	7.030807E-4	45.000004	25
CACGAGC	20	7.030807E-4	45.000004	36
ACGGGTC	20	7.030807E-4	45.000004	5
ACGGGCC	30	2.1639025E-6	45.000004	5
CATTACG	20	7.030807E-4	45.000004	38
TATTGCG	20	7.030807E-4	45.000004	1
CCGTATG	30	2.1639025E-6	45.000004	1
TAACCGA	20	7.030807E-4	45.000004	21
TCTACGG	30	2.1639025E-6	45.000004	2
CTAGTCC	20	7.030807E-4	45.000004	42