SRR3549339_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549339_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	250423
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1218	0.48637705003134696	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	598	0.23879595724034933	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	319	0.1273844654844004	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTTA	20	7.0227083E-4	45.000004	11
GGTACCC	20	7.0227083E-4	45.000004	8
GTACCCA	20	7.0227083E-4	45.000004	9
TACCCAG	20	7.0227083E-4	45.000004	10
CGTATGT	20	7.0227083E-4	45.000004	40
ATTAGGC	30	2.1586802E-6	45.000004	4
TTTACGT	20	7.0227083E-4	45.000004	30
CCCTAGC	80	0.0	45.000004	21
CCCTACA	80	0.0	45.000004	27
CTTCACC	20	7.0227083E-4	45.000004	11
GGCGTAG	20	7.0227083E-4	45.000004	1
CCGTGCC	20	7.0227083E-4	45.000004	32
CACGAGC	20	7.0227083E-4	45.000004	36
GCGTTAG	30	2.1586802E-6	45.000004	1
GCGCAGG	30	2.1586802E-6	45.000004	2
ACGGGCG	20	7.0227083E-4	45.000004	5
TGGCATC	20	7.0227083E-4	45.000004	12
CGTTAAG	30	2.1586802E-6	45.000004	2
AACGGGA	30	2.1586802E-6	45.000004	4
TCAATCT	30	2.1586802E-6	45.000004	29