SRR3549338_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549338_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	566152
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	934	0.1649733640435784	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	929	0.16409020898981191	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	872	0.15402224137687406	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGAATC	35	1.2104647E-7	45.000004	22
GCGACTA	20	7.0302485E-4	45.000004	1
GTCGAAG	55	1.8189894E-12	45.000004	2
ACGCAGC	20	7.0302485E-4	45.000004	30
CGGTTTA	140	0.0	45.000004	1
TCGGGCA	20	7.0302485E-4	45.000004	1
ATTCGCG	20	7.0302485E-4	45.000004	43
CGCGAGG	55	1.8189894E-12	45.000004	3
TCGTGCA	20	7.0302485E-4	45.000004	1
AGGTTCG	20	7.0302485E-4	45.000004	13
TGCGAAG	110	0.0	45.000004	2
ACGGACC	20	7.0302485E-4	45.000004	39
TTGCGAG	55	1.8189894E-12	45.000004	2
CATACGC	20	7.0302485E-4	45.000004	20
CGTACCA	20	7.0302485E-4	45.000004	12
GTCCCTA	20	7.0302485E-4	45.000004	34
GCGGAGT	35	1.2104647E-7	45.000004	37
TAGGCGG	20	7.0302485E-4	45.000004	6
CTTTACG	20	7.0302485E-4	45.000004	21
CGGTATG	20	7.0302485E-4	45.000004	13