SRR3549337_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549337_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1060496
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13444	1.2677086947994145	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	4013	0.3784078393506435	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	25	3.8906E-5	45.000004	1
TAATACG	25	3.8906E-5	45.000004	1
CTCACGT	25	3.8906E-5	45.000004	45
ACCGGAT	30	2.1653432E-6	45.000004	4
GTCGACT	25	3.8906E-5	45.000004	43
TTAGCGT	25	3.8906E-5	45.000004	14
TTTCGTA	25	3.8906E-5	45.000004	20
TAGCGTG	25	3.8906E-5	45.000004	15
GACCGGA	30	2.1653432E-6	45.000004	3
CCGGATG	30	2.1653432E-6	45.000004	5
TTCGTAA	25	3.8906E-5	45.000004	21
ATCGTAG	25	3.8906E-5	45.000004	1
GTATGAC	25	3.8906E-5	45.000004	25
CGAGGTA	30	2.1653432E-6	45.000004	20
CAAGGCG	50	2.1827873E-11	45.000004	1
GTGTCGA	25	3.8906E-5	45.000004	41
ACGTGCG	50	2.1827873E-11	45.000004	1
ATGAACG	60	0.0	45.000004	1
GGCGCGT	25	3.8906E-5	45.000004	8
CGGTAAA	25	3.8906E-5	45.000004	18