SRR3549336_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549336_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1090094
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9968	0.9144165549026048	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3772	0.34602520516579305	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1252	0.11485248061176376	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1181	0.10833928083266214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	20	7.0331246E-4	45.000004	1
TTAGGCG	50	2.1827873E-11	45.000004	1
GTACCGG	25	3.890672E-5	45.000004	2
GTCGATG	25	3.890672E-5	45.000004	22
CCCTCCG	20	7.0331246E-4	45.000004	43
CCGGATG	25	3.890672E-5	45.000004	5
GAATCGG	20	7.0331246E-4	45.000004	3
TCGATTG	20	7.0331246E-4	45.000004	1
TAGTTCG	20	7.0331246E-4	45.000004	1
TATTGCG	25	3.890672E-5	45.000004	1
TCGGAGT	25	3.890672E-5	45.000004	12
CGGGATA	145	0.0	45.000004	6
GTTCACG	40	6.8139343E-9	45.000004	1
CTCGAGG	40	6.8139343E-9	45.000004	2
GTATACG	25	3.890672E-5	45.000004	1
GACGATA	20	7.0331246E-4	45.000004	9
AGGGCGC	50	2.1827873E-11	45.000004	6
CGGAGTC	20	7.0331246E-4	45.000004	13
TGTCGAT	25	3.890672E-5	45.000004	21
TGTCGAG	25	3.890672E-5	45.000004	1