SRR3549335_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549335_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1121302
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10720	0.9560314705583332	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3941	0.35146642028641706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	45	3.8562575E-10	45.0	25
ATCTCGA	20	7.0332136E-4	45.0	20
GTACCGG	25	3.890744E-5	45.0	2
AAATCGT	20	7.0332136E-4	45.0	12
CGAACAT	20	7.0332136E-4	45.0	12
ATCTACG	20	7.0332136E-4	45.0	1
CGACGGT	45	3.8562575E-10	45.0	28
TAAACCG	45	3.8562575E-10	45.0	39
CCAGCGG	40	6.8139343E-9	45.0	2
TTCGTAA	35	1.2119017E-7	45.0	21
CGCGAGG	85	0.0	45.0	2
GCGTTAG	40	6.8139343E-9	45.0	1
TCGATAG	45	3.8562575E-10	45.0	1
TACATCC	20	7.0332136E-4	45.0	24
TCTACGT	40	6.8139343E-9	45.0	32
CTAGTTG	100	0.0	45.0	1
CTAGTCG	20	7.0332136E-4	45.0	1
CTACGTT	40	6.8139343E-9	45.0	33
AGGTTCG	20	7.0332136E-4	45.0	1
ACGTGTC	35	1.2119017E-7	45.0	13