SRR3549333_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549333_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	305898
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1631	0.5331842640357244	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	755	0.2468142975763163	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	730	0.2386416387161734	No Hit
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	446	0.14580023406494974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTA	25	3.88407E-5	45.000004	1
ATGGGCG	25	3.88407E-5	45.000004	5
TTGGCAG	25	3.88407E-5	45.000004	2
TACTTAG	25	3.88407E-5	45.000004	2
GGACTCT	35	1.2080272E-7	45.000004	8
CGACCTA	25	3.88407E-5	45.000004	33
CGGGGGT	35	1.2080272E-7	45.000004	6
GCTCTAG	25	3.88407E-5	45.000004	2
GGGACGA	35	1.2080272E-7	45.000004	8
TATCTGG	25	3.88407E-5	45.000004	2
GGAACGC	25	3.88407E-5	45.000004	8
CTCGAGG	25	3.88407E-5	45.000004	3
TCGAGGA	25	3.88407E-5	45.000004	4
ACGACCT	25	3.88407E-5	45.000004	32
TACCGGG	35	1.2080272E-7	45.000004	3
TCACGGG	40	6.7866495E-9	45.0	3
CGTATGG	20	7.02516E-4	45.0	2
CCAGGTA	20	7.02516E-4	45.0	5
ATTACGG	20	7.02516E-4	45.0	2
GTAGGGT	55	1.8189894E-12	45.0	4