SRR3549332_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549332_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	700931
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATACTAAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2741	0.3910513303021268	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1110	0.15836080869586305	No Hit
AAGGAAAGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	751	0.10714321381134519	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAA	20	7.0314E-4	45.000004	1
GACAGTA	20	7.0314E-4	45.000004	9
AGGTAGC	40	6.8084773E-9	45.000004	7
GGTACGC	20	7.0314E-4	45.000004	8
CCGGGAT	20	7.0314E-4	45.000004	18
CTCGTCT	20	7.0314E-4	45.000004	40
CCAGGTA	40	6.8084773E-9	45.000004	5
GAGTCGA	20	7.0314E-4	45.000004	9
CGTCTAT	20	7.0314E-4	45.000004	42
ACCCTGG	20	7.0314E-4	45.000004	27
GGCCCCA	20	7.0314E-4	45.000004	9
GCCGATC	30	2.1642845E-6	45.000004	9
GGGACGT	20	7.0314E-4	45.000004	9
CGGATCA	20	7.0314E-4	45.000004	33
CACTAGG	75	0.0	45.000004	3
CTTGCGA	20	7.0314E-4	45.000004	1
AGCGCGA	20	7.0314E-4	45.000004	1
GTCGTTT	20	7.0314E-4	45.000004	9
TCGTCGA	20	7.0314E-4	45.000004	1
CGAATCT	20	7.0314E-4	45.000004	13