SRR3549325_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549325_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1153591
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6721	0.5826155023747585	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1405	0.1217935992912566	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1346	0.11667913497938177	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCC	20	7.0332957E-4	45.000004	13
TTAGGTA	35	1.211938E-7	45.000004	32
TGTCACG	40	6.8157533E-9	45.000004	1
AACCGTG	20	7.0332957E-4	45.000004	35
AGCGTGT	20	7.0332957E-4	45.000004	27
AATCCGG	20	7.0332957E-4	45.000004	2
GCGACTT	20	7.0332957E-4	45.000004	45
TCCGCTA	40	6.8157533E-9	45.000004	40
CGAGTAA	20	7.0332957E-4	45.000004	38
ACGTTCG	40	6.8157533E-9	45.000004	1
GAGTACG	65	0.0	45.000004	1
GCACGTA	20	7.0332957E-4	45.000004	44
CGCGCAC	20	7.0332957E-4	45.000004	38
CACGATT	20	7.0332957E-4	45.000004	18
TAACGCG	20	7.0332957E-4	45.000004	1
TCGATAG	20	7.0332957E-4	45.000004	1
AACGGTC	20	7.0332957E-4	45.000004	22
TGTTGCG	35	1.211938E-7	45.000004	1
ATCCGAT	20	7.0332957E-4	45.000004	29
AGCGGTA	20	7.0332957E-4	45.000004	4