SRR3549323_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549323_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1299274
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4843	0.3727466261927815	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2442	0.18795111731628586	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1706	0.13130409751907604	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCG	1591	0.122453000675762	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1405	0.10813731360744538	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1393	0.10721372089336045	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGT	30	2.1657215E-6	45.000004	44
CGTAATT	30	2.1657215E-6	45.000004	36
TATAGCG	60	0.0	45.000004	1
AGCGTAT	20	7.0336263E-4	45.0	20
ACGTTAT	25	3.8910875E-5	45.0	16
TAACGCG	25	3.8910875E-5	45.0	1
CGACACG	25	3.8910875E-5	45.0	34
TACGCTA	35	1.2120836E-7	45.0	26
GTTAACG	55	1.8189894E-12	45.0	1
CGCTAAC	20	7.0336263E-4	45.0	11
TTGACGA	25	3.8910875E-5	45.0	22
CAGTCGT	20	7.0336263E-4	45.0	18
ACGACAC	25	3.8910875E-5	45.0	33
TAGTACG	110	0.0	45.0	1
GTACGAC	35	1.2120836E-7	45.0	12
AGTACGG	305	0.0	43.52459	2
CTACGAA	215	0.0	42.906975	11
GCTACGA	215	0.0	42.906975	10
CTACGGG	180	0.0	42.5	3
CACGACG	445	0.0	42.471912	26