SRR3549311_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549311_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	955819
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10397	1.0877582471158243	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	1006	0.10525005257271514	No Hit
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	996	0.10420382938610762	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCGA	20	7.0326886E-4	45.000004	12
CGACGTC	45	3.8380676E-10	45.000004	18
CCGCTCG	20	7.0326886E-4	45.000004	19
TCCACCG	20	7.0326886E-4	45.000004	31
ACGTCGC	45	3.8380676E-10	45.000004	20
CTTTCGT	20	7.0326886E-4	45.000004	39
CCAACGG	45	3.8380676E-10	45.000004	2
CGCAATC	20	7.0326886E-4	45.000004	20
TCGACTA	20	7.0326886E-4	45.000004	29
AATCGGC	20	7.0326886E-4	45.000004	42
TGCGTAG	70	0.0	45.000004	1
CTATGCG	25	3.8903105E-5	45.0	1
TGTTGCG	55	1.8189894E-12	45.0	1
ACTAACG	25	3.8903105E-5	45.0	1
AATACGG	25	3.8903105E-5	45.0	2
GTAATCG	30	2.1651158E-6	44.999996	1
CACGACG	120	0.0	43.124996	26
CGGTCTA	115	0.0	43.043476	31
CGTTTTT	4715	0.0	42.23224	1
CGGGTCC	70	0.0	41.785717	6