SRR3549301_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549301_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1253708
Sequences flagged as poor quality	0
Sequence length	86
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11847	0.9449568799114307	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4001	0.31913332291091706	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	3579	0.2854731723814477	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA	2978	0.23753537506341188	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTG	2689	0.21448375538801698	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2354	0.18776301977813015	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1918	0.15298618179033716	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1799	0.14349433839458628	No Hit
TATGAAGGGATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCA	1485	0.11844863397218491	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTG	1255	0.1001030542997253	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	15	0.0013098188	80.00001	6
GATACGA	20	4.0910443E-5	80.00001	80
CGACCGG	15	0.0013098188	80.00001	2
ATATGCG	40	4.1836756E-11	80.00001	1
ACGGGTA	55	0.0	80.00001	5
GTATGCG	30	4.06053E-8	80.00001	1
GGCACGT	50	0.0	80.0	8
CTAACGG	70	0.0	80.0	2
GTGCCGG	35	1.2896635E-9	80.0	2
CGGGATA	260	0.0	75.38461	6
CGTTTTT	5710	0.0	75.23643	1
ATTAGCG	70	0.0	74.28571	1
GTAGGGT	485	0.0	73.40206	4
TAGCGGG	815	0.0	73.12883	3
CGTAAGG	215	0.0	72.558136	2
TTGCGGA	50	3.6379788E-12	72.0	3
CGGGATC	240	0.0	71.66667	6
TAGCACG	45	1.1823431E-10	71.111115	1
TCCGCTA	405	0.0	71.11111	2
TATTGCG	175	0.0	70.85715	1