SRR3549297_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549297_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	662410
Sequences flagged as poor quality	0
Sequence length	86
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8161	1.232016424872813	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2792	0.42149122144895157	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	2619	0.39537446596518766	No Hit
GAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1577	0.23807007744448302	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	1445	0.2181428420464667	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAAT	1043	0.15745535242523512	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1030	0.15549282166633957	No Hit
GTTGTAGGGGGGAATTCTGGACATTAATTAGGGCTGAAAGCCCTAACTTA	924	0.13949064778611434	No Hit
GGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	752	0.11352485620688094	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAAC	712	0.10748630002566385	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGACCG	20	4.0896186E-5	80.00001	1
GCGTATG	20	4.0896186E-5	80.00001	1
TCGCGAG	20	4.0896186E-5	80.00001	1
TCTATCG	20	4.0896186E-5	80.00001	1
GCTAGCG	60	0.0	80.0	1
TATCGTA	35	1.2896635E-9	80.0	1
CCGTTGG	15	0.0013095448	80.0	1
GCGTAAG	25	1.2842029E-6	80.0	1
ACGTAGG	95	0.0	75.789474	2
GGCGATA	80	0.0	75.00001	8
CGTAAGG	75	0.0	74.666664	2
GGCGAGG	140	0.0	74.28571	2
CGTTTTT	3650	0.0	73.42466	1
GTAGCGG	170	0.0	72.94118	2
ACGATTG	50	3.6379788E-12	72.0	1
CGGGATA	235	0.0	71.48936	6
AACGGGA	185	0.0	71.35136	4
ACCGGAA	90	0.0	71.111115	4
GAGTACG	45	1.1823431E-10	71.111115	1
TCGATGG	45	1.1823431E-10	71.111115	2