SRR3549290_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549290_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1763616
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7816	0.44318037486618406	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	4815	0.2730186162974253	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	3491	0.19794558452633682	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	1778	0.10081559704606899	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCCG	20	7.0343126E-4	45.000004	1
TCGATAG	80	0.0	45.000004	1
ATCGTAC	20	7.0343126E-4	45.000004	31
CCGTATC	20	7.0343126E-4	45.000004	25
TACGCAC	20	7.0343126E-4	45.000004	21
GTTCGAC	20	7.0343126E-4	45.000004	28
TTACGCG	40	6.8193913E-9	45.000004	1
CGCACAT	20	7.0343126E-4	45.000004	31
TGTAACG	55	1.8189894E-12	45.000004	30
GCGTAAG	110	0.0	45.000004	1
TACGTTG	40	6.8193913E-9	45.000004	1
AAATGCG	55	1.8189894E-12	45.000004	1
CGAACCG	25	3.891657E-5	45.0	2
TACCACG	25	3.891657E-5	45.0	26
TACGCGG	70	0.0	45.0	2
TTAACGC	25	3.891657E-5	45.0	20
ACCGTAC	25	3.891657E-5	45.0	29
ACGTAAC	25	3.891657E-5	45.0	40
ATACGAC	35	1.2124292E-7	45.0	37
TATACGA	35	1.2124292E-7	45.0	36