SRR3549289_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549289_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1340538
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7501	0.5595514636660803	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3342	0.24930289182402884	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	55	1.8189894E-12	45.000004	1
CGAGTTA	30	2.1657725E-6	45.000004	37
TTTCGCG	25	3.8911538E-5	45.000004	1
GGCGTGA	25	3.8911538E-5	45.000004	8
CCGAGTT	30	2.1657725E-6	45.000004	36
TCCACGA	30	2.1657725E-6	45.000004	23
TCGTAAG	60	0.0	45.000004	1
ACCGTTC	30	2.1657725E-6	45.000004	27
CGCACTC	25	3.8911538E-5	45.000004	12
CGCGTCC	25	3.8911538E-5	45.000004	23
CCGCAAT	50	2.1827873E-11	45.000004	33
TTGATCG	20	7.033707E-4	45.0	20
CGGGTAC	20	7.033707E-4	45.0	6
CTATGCG	20	7.033707E-4	45.0	1
GTCGACG	20	7.033707E-4	45.0	13
CGCGGAT	35	1.2121382E-7	45.0	20
ATAGCGC	20	7.033707E-4	45.0	12
GCACGAG	20	7.033707E-4	45.0	1
AGCGGTG	20	7.033707E-4	45.0	41
AAACGCG	20	7.033707E-4	45.0	1