SRR3549285_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549285_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1132116
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6626	0.5852757137961128	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2674	0.2361948775567168	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCATAAC	45	3.8562575E-10	45.000004	16
CGGAATT	20	7.0332404E-4	45.000004	32
CTATGCG	40	6.8157533E-9	45.000004	1
CGTATTG	40	6.8157533E-9	45.000004	36
TAGACGT	20	7.0332404E-4	45.000004	11
TAGGTTG	20	7.0332404E-4	45.000004	11
ATTCGAA	40	6.8157533E-9	45.000004	23
CAATTCG	20	7.0332404E-4	45.000004	1
TAAGTCG	20	7.0332404E-4	45.000004	34
CGCGAAA	20	7.0332404E-4	45.000004	24
TATTGCG	40	6.8157533E-9	45.000004	1
GTAGATC	20	7.0332404E-4	45.000004	13
ACGTGCG	40	6.8157533E-9	45.000004	1
GCGATAC	40	6.8157533E-9	45.000004	9
CTCGCAG	20	7.0332404E-4	45.000004	25
CAGTCGT	20	7.0332404E-4	45.000004	44
ATCTCGC	25	3.890768E-5	45.0	31
ACGCATG	35	1.2119017E-7	45.0	1
TCCGATT	25	3.890768E-5	45.0	12
ATAGCCG	25	3.890768E-5	45.0	1