SRR3549280_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549280_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1434984
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	6635	0.46237449337414216	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5752	0.40084070623783963	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5188	0.36153713212133376	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3150	0.21951464267197404	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2979	0.2075981334983526	No Hit
GCCAGACAAAGGTTGCCAATCTTTGTGGTATAAACCAGAAGCTAATGGCTG	2628	0.1831379304577612	No Hit
GAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2248	0.15665679896082466	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2071	0.1443221666583042	No Hit
AGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA	2067	0.14404341790570488	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2059	0.1434859204005062	No Hit
GGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1965	0.1369353247144219	No Hit
GCCGAAGGGAATAGGAGGTGAATTAGATAGGGAAAAGATCGGGATGCTACT	1657	0.11547167076427334	No Hit
GAAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1549	0.10794545444409137	No Hit
TAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1496	0.10425203347215022	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1473	0.10264922814470405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCC	25	3.8912913E-5	45.000004	28
AGCCGTA	25	3.8912913E-5	45.000004	42
ATCTCGC	25	3.8912913E-5	45.000004	12
AGTCCGC	25	3.8912913E-5	45.000004	25
CGAGTCG	25	3.8912913E-5	45.000004	27
CCGATTC	25	3.8912913E-5	45.000004	37
ACGTTAT	50	2.1827873E-11	45.000004	38
TCCGAGT	25	3.8912913E-5	45.000004	12
CACGCTT	25	3.8912913E-5	45.000004	26
GCACGTA	50	2.1827873E-11	45.000004	9
TCCTCGA	25	3.8912913E-5	45.000004	21
GTTACGT	25	3.8912913E-5	45.000004	25
CCACTAG	50	2.1827873E-11	45.000004	45
CCGTAAA	25	3.8912913E-5	45.000004	30
AAGTTCG	25	3.8912913E-5	45.000004	15
CGTAGAT	25	3.8912913E-5	45.000004	33
CGCTAAT	25	3.8912913E-5	45.000004	40
TATTCCG	25	3.8912913E-5	45.000004	35
TCGCTAA	25	3.8912913E-5	45.000004	39
TCCACGA	25	3.8912913E-5	45.000004	44