SRR3549276_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549276_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1224072
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5413	0.44221254958858625	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	2080	0.1699246449555255	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1529	0.12491095295048005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCAA	20	7.0334657E-4	45.000004	15
CAAGTCG	20	7.0334657E-4	45.000004	1
GCGGTAT	20	7.0334657E-4	45.000004	36
CTATCGG	20	7.0334657E-4	45.000004	21
GCGAAGT	20	7.0334657E-4	45.000004	44
GCAACGC	20	7.0334657E-4	45.000004	9
ACCGCCC	20	7.0334657E-4	45.000004	28
GGCGTAA	20	7.0334657E-4	45.000004	20
GCTATCG	20	7.0334657E-4	45.000004	20
CGATTGA	20	7.0334657E-4	45.000004	10
CGCGAGA	20	7.0334657E-4	45.000004	45
CCTCGGT	20	7.0334657E-4	45.000004	43
TTATCCG	20	7.0334657E-4	45.000004	1
ACCTCGC	20	7.0334657E-4	45.000004	44
CCCGTCG	20	7.0334657E-4	45.000004	12
GTTCGGT	20	7.0334657E-4	45.000004	17
CTACGCT	20	7.0334657E-4	45.000004	29
CGAGGTA	40	6.8157533E-9	45.000004	42
TTACGCT	20	7.0334657E-4	45.000004	28
GCGTGAG	20	7.0334657E-4	45.000004	30