SRR3549275_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549275_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1789172
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10147	0.5671338473886244	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3656	0.20434033172886676	No Hit
GAGCTGTCTCTTATACACATCTGACGCGCCATGAATCGTATGCCGTCTTCT	2079	0.11619900154932002	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2076	0.11603132622240901	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCGTAA	35	1.2124292E-7	45.000004	19
CCACTCG	35	1.2124292E-7	45.000004	26
CGGATTA	35	1.2124292E-7	45.000004	29
GTCCGTG	35	1.2124292E-7	45.000004	42
AACGAGT	30	2.1661817E-6	45.000004	17
TACTCGA	30	2.1661817E-6	45.000004	15
TTACGTC	30	2.1661817E-6	45.000004	21
CGTAACA	30	2.1661817E-6	45.000004	17
GTCGAAC	25	3.891679E-5	45.0	17
ACACCGA	20	7.034341E-4	45.0	18
CGCGACT	20	7.034341E-4	45.0	43
ATCCGAT	25	3.891679E-5	45.0	26
TCGGATC	20	7.034341E-4	45.0	41
AGTGCGT	20	7.034341E-4	45.0	29
ACGATAA	20	7.034341E-4	45.0	16
ACTAACG	20	7.034341E-4	45.0	20
CGTAACT	25	3.891679E-5	45.0	33
CCGCGAC	20	7.034341E-4	45.0	42
GCTCGAA	20	7.034341E-4	45.0	42
TCGACTA	20	7.034341E-4	45.0	29