SRR3549273_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549273_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2098428
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12141	0.578575962577701	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3552	0.1692695675048179	No Hit
GAGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCT	2705	0.12890601917244718	No Hit
AAGCTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCT	2219	0.10574582496992986	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2175	0.10364901726435218	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGGA	40	6.8193913E-9	45.000004	8
CATGCGT	30	2.1663618E-6	45.000004	30
CGCATCG	35	1.2125747E-7	45.000004	21
GTCACGA	20	7.0346193E-4	45.000004	41
CGTAAGA	20	7.0346193E-4	45.000004	34
CGTAAAC	20	7.0346193E-4	45.000004	38
ACCGTTA	40	6.8193913E-9	45.000004	35
ACGTATC	20	7.0346193E-4	45.000004	35
AACTCGC	20	7.0346193E-4	45.000004	16
CACCGTA	30	2.1663618E-6	45.000004	40
GCCCGTA	30	2.1663618E-6	45.000004	14
GCGTACA	20	7.0346193E-4	45.000004	12
CCGAATA	25	3.8919105E-5	45.0	41
CGACGGT	495	0.0	43.636364	28
TATAGCG	95	0.0	42.63158	1
CGGTCTA	520	0.0	42.403843	31
ATACGAA	365	0.0	41.917805	19
CATACGA	385	0.0	41.493507	18
CGTTTTT	6325	0.0	41.47826	1
CGATCAT	60	3.6379788E-12	41.250004	10