SRR3549260_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549260_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2186712
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	33948	1.5524678146916466	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3050	0.1394788156830895	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2194	0.10033328577334372	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTCGT	25	3.8919643E-5	45.000004	31
CACCGTA	25	3.8919643E-5	45.000004	34
CGGTAAC	25	3.8919643E-5	45.000004	32
ACCGGGT	20	7.034686E-4	45.0	4
CGTATCG	20	7.034686E-4	45.0	28
CGCATCG	40	6.8193913E-9	45.0	21
CACGACT	20	7.034686E-4	45.0	14
GTTCGGA	20	7.034686E-4	45.0	35
CACGAAT	30	2.1664055E-6	44.999996	38
CGTTTTT	14305	0.0	43.159733	1
CGTATGG	215	0.0	41.860466	2
TGTTACG	60	3.6379788E-12	41.249996	1
ACGGGAT	1360	0.0	40.69853	5
TCGTAAG	100	0.0	40.500004	1
GGCGATA	780	0.0	40.384617	8
TGGGATC	1495	0.0	40.33445	6
GTGTACG	95	0.0	40.263157	1
CTCACGA	140	0.0	40.17857	24
TTTGACG	140	0.0	40.17857	1
AGGGCGA	1905	0.0	40.03937	6