SRR3549256_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549256_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2311439
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	99285	4.295376170428898	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTT	4842	0.20947989542445203	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCT	4013	0.1736147914783821	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGAGGCGTATCGTATGCCGTCTTC	3157	0.13658158402622783	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2539	0.10984499266474261	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAATC	45	3.8562575E-10	45.000004	33
CTACGTA	40	6.8193913E-9	45.0	28
CGTACTC	25	3.892035E-5	45.0	37
GCGTAAT	25	3.892035E-5	45.0	9
CCGAATA	65	0.0	44.999996	16
CGTTTTT	36215	0.0	43.831978	1
TATTGCG	245	0.0	42.2449	1
CGTTAGG	290	0.0	41.120693	2
GTTGATC	750	0.0	41.100002	16
TGCGTAG	115	0.0	41.086956	1
CGTCGTA	50	1.0822987E-9	40.5	30
TCGACGG	100	0.0	40.5	2
TTAATCG	460	0.0	40.108692	20
CGACGGT	180	0.0	40.000004	28
TAGCACG	45	1.9297659E-8	40.000004	1
CACTACG	45	1.9297659E-8	40.000004	1
ACCGTAG	45	1.9297659E-8	40.000004	1
GTTTTTT	40240	0.0	39.732853	2
CGTAAGG	280	0.0	39.375	2
CTCATGC	770	0.0	39.15584	23