Basic Statistics
Measure | Value |
---|---|
Filename | SRR3549250_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 987228 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7100 | 0.7191854363936193 | No Hit |
TCTGGGAACATGGTCAAGCGAGACACGACCAAAGTGAAACACGTGAGGGC | 1423 | 0.14414096844903102 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA | 1101 | 0.11152438950272886 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACGCGT | 20 | 7.85594E-4 | 44.000004 | 27 |
TTACGTC | 20 | 7.85594E-4 | 44.000004 | 26 |
GATTCGC | 20 | 7.85594E-4 | 44.000004 | 9 |
CGTTTTT | 4505 | 0.0 | 41.607105 | 1 |
AACGGAC | 60 | 3.6379788E-12 | 40.333336 | 38 |
CGTTAGG | 170 | 0.0 | 40.11765 | 2 |
GCGATCA | 110 | 0.0 | 40.0 | 9 |
GCTACGA | 55 | 7.8216544E-11 | 40.0 | 10 |
ATGGGCG | 430 | 0.0 | 39.906975 | 5 |
TATGCCA | 160 | 0.0 | 39.875004 | 10 |
TTTACGG | 90 | 0.0 | 39.111107 | 2 |
TGATGCG | 90 | 0.0 | 39.111107 | 1 |
TAACGGG | 265 | 0.0 | 39.018867 | 3 |
ACGGGTA | 85 | 0.0 | 38.823532 | 5 |
GGCGATA | 455 | 0.0 | 38.68132 | 8 |
ATTGCGG | 165 | 0.0 | 38.666668 | 2 |
CTCACGA | 205 | 0.0 | 38.634148 | 24 |
AGGGCGA | 1045 | 0.0 | 38.526318 | 6 |
GGGCGAT | 1945 | 0.0 | 38.457584 | 7 |
TATGGGC | 395 | 0.0 | 38.43038 | 4 |