SRR3549240_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549240_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	940187
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4005	0.4259790871390478	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3891	0.4138538397148652	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	3295	0.3504621952866824	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2202	0.23420872656184352	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	1175	0.12497513792468944	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	1060	0.11274352868099645	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	981	0.10434094493967688	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	20	7.03263E-4	45.000004	43
ACTATCG	20	7.03263E-4	45.000004	1
GATACCA	35	1.2116107E-7	45.000004	20
GGTACGA	20	7.03263E-4	45.000004	9
GTCGATA	20	7.03263E-4	45.000004	25
CAACGCG	20	7.03263E-4	45.000004	14
TAACGTA	20	7.03263E-4	45.000004	34
GTTACAT	20	7.03263E-4	45.000004	8
CTAACGT	20	7.03263E-4	45.000004	33
CATAGGT	30	2.1650776E-6	45.000004	35
CTACGGC	20	7.03263E-4	45.000004	41
ACTACGG	20	7.03263E-4	45.000004	40
CGAATAT	30	2.1650776E-6	45.000004	14
GATGCGA	40	6.8121153E-9	45.000004	9
CATACGC	35	1.2116107E-7	45.000004	32
ACAGACG	20	7.03263E-4	45.000004	11
CCAACGG	30	2.1650776E-6	45.000004	2
CACGTGC	20	7.03263E-4	45.000004	42
CACAACG	20	7.03263E-4	45.000004	12
CGATCAA	20	7.03263E-4	45.000004	10