SRR3549212_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549212_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	298468
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	993	0.33269898280552684	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	699	0.23419596070600535	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	611	0.20471206293471997	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	20	7.0248847E-4	45.000004	6
CGTGGAT	20	7.0248847E-4	45.000004	27
AGACTAC	20	7.0248847E-4	45.000004	20
CTCACTC	20	7.0248847E-4	45.000004	13
ACTATAG	25	3.8838425E-5	45.000004	2
TCGTTAA	20	7.0248847E-4	45.000004	1
ACGCCTG	20	7.0248847E-4	45.000004	39
TTGGACG	20	7.0248847E-4	45.000004	16
GATCGAG	20	7.0248847E-4	45.000004	1
ATAGGCG	40	6.7866495E-9	45.000004	5
ACGTTGG	20	7.0248847E-4	45.000004	2
ACTTGCG	20	7.0248847E-4	45.000004	1
TAGACGG	25	3.8838425E-5	45.000004	2
GACACGA	25	3.8838425E-5	45.000004	25
TAGGTTA	20	7.0248847E-4	45.000004	6
GCTATTC	25	3.8838425E-5	45.000004	39
CATTGAG	20	7.0248847E-4	45.000004	2
GCTATGC	20	7.0248847E-4	45.000004	45
ACATTAG	20	7.0248847E-4	45.000004	2
CATCTAA	20	7.0248847E-4	45.000004	20