##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549205_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1405008 Sequences flagged as poor quality 0 Sequence length 50 %GC 45 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.52128244109642 31.0 31.0 33.0 30.0 34.0 2 31.710550402559985 31.0 31.0 34.0 30.0 34.0 3 31.765737276940772 31.0 31.0 34.0 30.0 34.0 4 35.667153496634896 37.0 35.0 37.0 35.0 37.0 5 27.2733664149955 35.0 26.0 37.0 0.0 37.0 6 31.42202962545409 35.0 28.0 37.0 17.0 37.0 7 14.797332114834933 0.0 0.0 32.0 0.0 37.0 8 24.981023595595186 17.0 17.0 35.0 17.0 37.0 9 33.14764755787867 32.0 32.0 37.0 28.0 39.0 10 36.053617488299 37.0 35.0 39.0 32.0 39.0 11 37.026009816314215 39.0 37.0 39.0 34.0 39.0 12 36.911533599808685 39.0 35.0 39.0 33.0 39.0 13 36.36733456321957 39.0 35.0 39.0 32.0 39.0 14 37.64418280892351 40.0 36.0 41.0 33.0 41.0 15 37.96668773416237 40.0 36.0 41.0 33.0 41.0 16 38.04193285732181 40.0 36.0 41.0 33.0 41.0 17 38.07822944780386 40.0 36.0 41.0 34.0 41.0 18 38.052838133306004 40.0 36.0 41.0 34.0 41.0 19 37.98143355767369 40.0 36.0 41.0 34.0 41.0 20 37.988079783175614 40.0 36.0 41.0 34.0 41.0 21 37.842619401455366 40.0 35.0 41.0 34.0 41.0 22 37.76012022707344 39.0 35.0 41.0 33.0 41.0 23 37.658994824228756 39.0 35.0 41.0 33.0 41.0 24 37.536803349162426 39.0 35.0 41.0 33.0 41.0 25 37.348959578877846 39.0 35.0 41.0 33.0 41.0 26 37.07995114618564 39.0 35.0 40.0 33.0 41.0 27 36.86801285117238 38.0 35.0 40.0 32.0 41.0 28 36.90152013369319 39.0 35.0 40.0 32.0 41.0 29 36.90739696855819 38.0 35.0 40.0 32.0 41.0 30 36.70929062325624 38.0 35.0 40.0 32.0 41.0 31 36.535540722899796 38.0 35.0 40.0 31.0 41.0 32 36.2865777276713 38.0 35.0 40.0 31.0 41.0 33 36.073702783187 38.0 35.0 40.0 30.0 41.0 34 35.8558029562821 38.0 35.0 40.0 30.0 41.0 35 35.71208633687495 38.0 35.0 40.0 29.0 41.0 36 35.48185206062884 38.0 35.0 40.0 29.0 41.0 37 35.28936632389282 38.0 34.0 40.0 27.0 41.0 38 35.150159287349254 38.0 34.0 40.0 27.0 41.0 39 35.10360083358956 38.0 34.0 40.0 27.0 41.0 40 34.874322423786914 37.0 34.0 40.0 26.0 41.0 41 34.73665559199663 37.0 34.0 40.0 26.0 40.0 42 34.73209120517463 37.0 34.0 40.0 26.0 41.0 43 34.587447188912805 37.0 34.0 40.0 25.0 41.0 44 34.380803525673876 37.0 33.0 40.0 24.0 40.0 45 34.150546473756734 36.0 33.0 40.0 24.0 40.0 46 34.14813937002494 36.0 33.0 39.0 24.0 40.0 47 34.02508170771981 36.0 33.0 39.0 24.0 40.0 48 33.96296889412729 36.0 33.0 39.0 24.0 40.0 49 33.84326779633995 36.0 33.0 39.0 24.0 40.0 50 33.90136426269459 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 2.0 14 13.0 15 32.0 16 72.0 17 200.0 18 511.0 19 1078.0 20 1956.0 21 3388.0 22 5261.0 23 7953.0 24 12217.0 25 17727.0 26 22726.0 27 24587.0 28 25541.0 29 28859.0 30 34735.0 31 47321.0 32 66579.0 33 125700.0 34 121087.0 35 145463.0 36 181492.0 37 341194.0 38 153618.0 39 35694.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.170996891120907 23.778654641112364 28.265461833669274 16.784886634097457 2 31.30964378850512 24.664201200277862 31.225872023504493 12.800282987712524 3 28.972931114982973 23.251824900641136 35.07809208203796 12.697151902337922 4 26.688317788937855 26.302697208841515 32.64130880393564 14.367676198284993 5 17.129297484427138 48.450329108446354 23.77538063840206 10.644992768724448 6 22.289481625727397 39.023834739731015 28.62631387152244 10.060369763019143 7 38.22867912495872 56.539393370002166 4.235990115358774 0.9959373896803434 8 86.8889002767244 3.456990992222108 8.052267318050859 1.6018414130026308 9 82.6005972919727 5.387442633778598 9.45410986983704 2.5578502044116473 10 54.495917460968194 21.34023436165488 14.407035404780613 9.756812772596312 11 49.390679626023484 18.534200517007733 19.889779987017867 12.18533986995092 12 43.13035940008882 21.017389224830037 23.302714290594785 12.549537084486351 13 21.2326193160466 40.399129399974946 23.768049719289856 14.6002015646886 14 14.626820630202817 42.08438670811839 28.732149567831645 14.556643093847152 15 15.013864689738421 21.805071572546204 49.30178333504151 13.879280402673864 16 15.837062849464203 16.92573992461253 48.50798002573651 18.72921720018676 17 16.529656770637605 18.06018186373316 29.939117784382724 35.47104358124651 18 21.746068349788754 23.61466980970927 33.725288396934396 20.91397344356758 19 30.32267431929213 22.779941466525457 26.073303497204286 20.824080716978123 20 31.457614476216506 22.321225217222963 25.872806418184098 20.348353888376437 21 22.891826950451527 26.49486693314202 28.43713345404439 22.176172662362063 22 22.818019541525743 24.813168323596734 26.073018801316433 26.29579333356109 23 20.645505221322583 29.64025827610946 25.845190917062393 23.869045585505564 24 21.05660608338173 22.73866056278683 38.62298292963457 17.581750424196873 25 18.43021534396957 24.886975732522522 35.917944951203125 20.764863972304784 26 16.932003234145284 33.09817452996709 28.5852464896997 21.384575746187924 27 19.093627936638082 32.1044435334176 30.074846548916444 18.727081981027865 28 16.113787252456927 27.70233336749684 39.11607620739526 17.067803172650976 29 16.393216266384247 25.042704383177888 37.81750708892761 20.746572261510256 30 18.53797273752178 29.38517076059353 31.830352567387514 20.24650393449717 31 28.545531413344268 26.06341031510141 25.834585995239884 19.55647227631444 32 29.982391559336317 25.82995968706228 27.137567899969252 17.05008085363215 33 28.176067324883558 27.565252297495814 25.680280824023775 18.578399553596846 34 19.80529648229761 27.068173277305185 30.1122128841971 23.014317356200106 35 22.23546058100737 24.785125778643252 30.931567649436868 22.047845990912506 36 29.363320351200844 25.481705442246593 26.542055276553583 18.612918929998976 37 21.19916754922392 31.968643594911917 28.675281564233085 18.15690729163108 38 21.558169063806044 32.57831983874825 24.078225889105255 21.78528520834045 39 22.87695159031123 30.279542892282464 26.53693075057224 20.306574766834068 40 23.531467436484345 25.879212075660778 25.536367052714294 25.052953435140584 41 17.766446881441244 25.744622094678466 26.609812897862504 29.87911812601779 42 22.28933927778347 27.297139945110633 23.608904717980252 26.804616059125642 43 23.897159304431007 27.433438101420066 25.064768314486464 23.604634279662466 44 20.95867069796044 31.364447746916746 26.277359274822636 21.399522280300186 45 18.235412182706433 36.03659196246569 22.600440709234395 23.127555145593476 46 21.33703153291654 32.88984831403095 26.518354343889854 19.254765809162652 47 23.641929440971154 26.26938778996276 27.704895630487513 22.38378713857857 48 24.82626433443795 23.273675310033823 29.72217951783904 22.17788083768918 49 20.892977121838452 24.439362622846275 31.082242948082854 23.585417307232415 50 19.192417409722935 32.58992119617824 26.57920808991835 21.638453304180473 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 510.0 1 1236.5 2 1963.0 3 8780.0 4 15597.0 5 11893.0 6 8189.0 7 8404.0 8 8619.0 9 8892.5 10 9166.0 11 9106.0 12 9046.0 13 8638.5 14 8231.0 15 7788.5 16 7346.0 17 7055.5 18 6765.0 19 6627.5 20 6490.0 21 6260.5 22 6031.0 23 6281.0 24 6531.0 25 9352.0 26 12173.0 27 15055.5 28 17938.0 29 19915.0 30 21892.0 31 22726.5 32 23561.0 33 27008.0 34 30455.0 35 33587.5 36 36720.0 37 44922.5 38 53125.0 39 70951.5 40 88778.0 41 109624.5 42 130471.0 43 134116.5 44 137762.0 45 130192.0 46 122622.0 47 114299.5 48 105977.0 49 102285.5 50 98594.0 51 94190.0 52 89786.0 53 81982.0 54 74178.0 55 68592.5 56 63007.0 57 58542.5 58 54078.0 59 49919.0 60 45760.0 61 40582.0 62 35404.0 63 29698.0 64 23992.0 65 19868.5 66 15745.0 67 13523.0 68 11301.0 69 9399.0 70 7497.0 71 6060.0 72 4623.0 73 3590.0 74 2557.0 75 1915.0 76 1273.0 77 1031.0 78 789.0 79 572.0 80 355.0 81 211.0 82 67.0 83 47.5 84 28.0 85 17.0 86 6.0 87 6.5 88 7.0 89 4.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1405008.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.510458817666958 #Duplication Level Percentage of deduplicated Percentage of total 1 76.06069374887545 14.079183392817377 2 5.676898294071058 2.101639841689723 3 2.1164397293290387 1.1752881134945812 4 1.2942245627881603 0.9582676188121306 5 0.9304749968433681 0.8611759554968981 6 0.7705210140125269 0.855761849881552 7 0.6438350492530301 0.8342377515198153 8 0.5781410722562098 0.856132520704031 9 0.5290668154331591 0.8813942548982729 >10 8.863035082961217 39.60994975258354 >50 2.197981749520699 28.224397259336264 >100 0.33376151542468163 7.996546502716429 >500 0.002052653846400255 0.2557101490225295 >1k 0.0028737153849603576 1.3103150370268872 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4990 0.35515812009611336 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 4221 0.30042533565645174 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2119 0.15081764658991265 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2032 0.1446255110291187 No Hit AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 1512 0.10761504560828122 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.011245487570177536 0.0 2 0.0 0.0 0.0 0.03615637775727967 0.0 3 0.0 0.0 0.0 0.04740186532745721 0.0 4 0.0 0.0 0.0 0.06782879528088097 0.0 5 0.0 0.0 0.0 0.10761504560828124 0.0 6 0.0 0.0 0.0 0.16640474644984227 0.0 7 0.0 0.0 0.0 0.2098920433193263 0.0 8 0.0 0.0 0.0 0.4203534784143578 0.0 9 0.0 0.0 0.0 0.51216790224682 0.0 10 0.0 0.0 0.0 0.6712417295844579 0.0 11 0.0 0.0 0.0 0.8447638732306151 0.0 12 0.0 0.0 0.0 0.9877523829045813 0.0 13 0.0 0.0 0.0 1.0509548700078577 0.0 14 0.0 0.0 0.0 1.070314190381834 0.0 15 0.0 0.0 0.0 1.1072534818307085 0.0 16 0.0 0.0 0.0 1.1888900276724403 0.0 17 0.0 0.0 0.0 1.2900994158040382 0.0 18 0.0 0.0 0.0 1.4383547994032775 0.0 19 0.0 0.0 0.0 1.500276155011217 0.0 20 0.0 0.0 0.0 1.568176124264061 0.0 21 0.0 0.0 0.0 1.6597058522086707 0.0 22 0.0 0.0 0.0 1.7560754102467744 0.0 23 0.0 0.0 0.0 1.8593488435653036 0.0 24 0.0 0.0 0.0 1.9451846537528612 0.0 25 0.0 0.0 0.0 2.006607791557059 0.0 26 0.0 0.0 0.0 2.073582499174382 0.0 27 0.0 0.0 0.0 2.135219158894469 0.0 28 0.0 0.0 0.0 2.2034038240351657 0.0 29 0.0 0.0 0.0 2.2764994932413196 0.0 30 0.0 0.0 0.0 2.3677445252980767 0.0 31 0.0 0.0 0.0 2.4643276052520697 0.0 32 0.0 0.0 0.0 2.5545050277293795 0.0 33 0.0 0.0 0.0 2.637066835206632 0.0 34 0.0 0.0 0.0 2.7245396467493426 0.0 35 0.0 0.0 0.0 2.832866432077255 0.0 36 0.0 0.0 0.0 2.926389031236833 0.0 37 0.0 0.0 0.0 3.0189151947889266 0.0 38 0.0 0.0 0.0 3.103612221425074 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGTTTCG 25 4.443347E-5 44.0 21 CAACGTT 25 4.443347E-5 44.0 35 ACGTTAT 20 7.8570814E-4 44.0 38 CGTGAAT 30 2.5281206E-6 44.0 32 CGCATCG 20 7.8570814E-4 44.0 21 ATTACGG 50 2.7284841E-11 44.0 2 ACTCTAT 20 7.8570814E-4 44.0 19 ATTAACG 30 2.5281206E-6 44.0 1 TTCGTCA 20 7.8570814E-4 44.0 1 TACGCTA 20 7.8570814E-4 44.0 39 GCCGACC 30 2.5281206E-6 44.0 14 CGCTAAT 20 7.8570814E-4 44.0 32 ACTACGG 45 4.802132E-10 44.0 2 ACGTCAA 20 7.8570814E-4 44.0 1 CGTAAGC 20 7.8570814E-4 44.0 31 CGTAAAT 20 7.8570814E-4 44.0 23 CGGTCGA 35 1.4463876E-7 44.0 29 ACGAGTT 20 7.8570814E-4 44.0 10 TAGTCCG 20 7.8570814E-4 44.0 12 TACGTCA 20 7.8570814E-4 44.0 24 >>END_MODULE