Basic Statistics
Measure | Value |
---|---|
Filename | SRR3549204_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 533224 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 1680 | 0.3150645882405893 | No Hit |
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1283 | 0.24061182542421197 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1145 | 0.21473151996159212 | No Hit |
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 642 | 0.12039968193479664 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGTA | 30 | 2.163304E-6 | 45.000004 | 22 |
GACAACG | 30 | 2.163304E-6 | 45.000004 | 12 |
CGTTATT | 195 | 0.0 | 45.000004 | 1 |
CGTTAAG | 65 | 0.0 | 45.000004 | 2 |
CGTAAAG | 35 | 1.2102828E-7 | 45.000004 | 2 |
CGTCAAG | 35 | 1.2102828E-7 | 45.000004 | 2 |
TTGGGAC | 60 | 0.0 | 45.000004 | 5 |
ACGCGAT | 20 | 7.02988E-4 | 45.0 | 26 |
AACGTAC | 20 | 7.02988E-4 | 45.0 | 21 |
TAGCGAA | 25 | 3.8879825E-5 | 45.0 | 1 |
TTCACGA | 20 | 7.02988E-4 | 45.0 | 27 |
TGTATCG | 20 | 7.02988E-4 | 45.0 | 13 |
TCTAGAT | 20 | 7.02988E-4 | 45.0 | 21 |
CTGGTCG | 25 | 3.8879825E-5 | 45.0 | 11 |
CGTTAGT | 20 | 7.02988E-4 | 45.0 | 30 |
AAGCACG | 20 | 7.02988E-4 | 45.0 | 1 |
TCGTCCG | 20 | 7.02988E-4 | 45.0 | 17 |
GGTATCG | 20 | 7.02988E-4 | 45.0 | 8 |
GTCGTAA | 20 | 7.02988E-4 | 45.0 | 1 |
TCCGTTC | 20 | 7.02988E-4 | 45.0 | 15 |