Basic Statistics
Measure | Value |
---|---|
Filename | SRR3549200_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 805026 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1771 | 0.21999289463942778 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1566 | 0.19452787860267867 | No Hit |
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC | 1479 | 0.1837207742358632 | No Hit |
AAGGAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 1250 | 0.15527448802895807 | No Hit |
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG | 925 | 0.11490312114142898 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTAAG | 60 | 0.0 | 45.000004 | 2 |
TGCACGG | 30 | 2.1646883E-6 | 45.000004 | 2 |
TCGTTAG | 25 | 3.8897608E-5 | 45.0 | 2 |
GTCGAAA | 20 | 7.0320256E-4 | 45.0 | 1 |
GCGAATA | 50 | 2.1827873E-11 | 45.0 | 1 |
CGGTTTA | 25 | 3.8897608E-5 | 45.0 | 1 |
GACCGAC | 20 | 7.0320256E-4 | 45.0 | 9 |
TGCGCAA | 50 | 2.1827873E-11 | 45.0 | 1 |
TCATGCG | 25 | 3.8897608E-5 | 45.0 | 34 |
CCGAATG | 20 | 7.0320256E-4 | 45.0 | 1 |
CCGGTGA | 20 | 7.0320256E-4 | 45.0 | 37 |
CGGTCTA | 70 | 0.0 | 45.0 | 31 |
CGCGTAG | 25 | 3.8897608E-5 | 45.0 | 2 |
TGCGTAA | 35 | 1.2113196E-7 | 45.0 | 1 |
CGTTTTA | 1135 | 0.0 | 42.81938 | 1 |
AATAGGC | 175 | 0.0 | 42.42857 | 4 |
CGCGACC | 80 | 0.0 | 42.1875 | 10 |
TGATAAG | 225 | 0.0 | 42.0 | 2 |
AGGCGAT | 675 | 0.0 | 42.0 | 7 |
TAAGGCG | 140 | 0.0 | 41.785713 | 5 |