SRR3549192_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549192_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1514607
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7657	0.5055436822885409	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3734	0.24653259888538742	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1534	0.10128039814948696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	35	1.2122655E-7	45.0	1
CACGGTA	20	7.033997E-4	45.0	40
CAACGTA	20	7.033997E-4	45.0	20
GTTTACG	50	2.1827873E-11	45.0	1
CGACCGT	20	7.033997E-4	45.0	30
ATCCGTC	20	7.033997E-4	45.0	26
TGCGCAA	25	3.8913957E-5	45.0	15
CTTATCG	35	1.2122655E-7	45.0	1
ACGGATA	25	3.8913957E-5	45.0	25
ACTACGT	25	3.8913957E-5	45.0	45
ACGCTAG	20	7.033997E-4	45.0	1
CGTACAA	20	7.033997E-4	45.0	39
CGACTAT	20	7.033997E-4	45.0	27
ACGCGTA	20	7.033997E-4	45.0	23
TCGATAG	65	0.0	44.999996	1
ACGTCGG	30	2.1659616E-6	44.999996	2
CGGTCTA	125	0.0	43.199997	31
TGTTACG	120	0.0	43.124996	1
CGTTTTT	6885	0.0	43.104576	1
GTTACGG	215	0.0	42.906975	2