##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549185_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2172190 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.14489984761922 31.0 31.0 33.0 30.0 34.0 2 31.47885866337659 31.0 31.0 34.0 30.0 34.0 3 31.521436890879713 31.0 31.0 34.0 30.0 34.0 4 35.36433737380248 37.0 35.0 37.0 33.0 37.0 5 35.27782330274976 37.0 35.0 37.0 33.0 37.0 6 35.33065845989531 37.0 35.0 37.0 33.0 37.0 7 35.80690363181858 37.0 35.0 37.0 35.0 37.0 8 35.72763017968042 37.0 35.0 37.0 35.0 37.0 9 37.483174123810535 39.0 37.0 39.0 35.0 39.0 10 36.97092749713423 39.0 37.0 39.0 32.0 39.0 11 36.6491830825112 39.0 35.0 39.0 32.0 39.0 12 35.72017825328355 37.0 35.0 39.0 31.0 39.0 13 35.320814017190024 37.0 35.0 39.0 30.0 39.0 14 36.16280251727519 38.0 35.0 40.0 30.0 41.0 15 36.51121725079298 38.0 35.0 40.0 31.0 41.0 16 36.656740432466776 38.0 35.0 40.0 32.0 41.0 17 36.59822161044844 38.0 35.0 40.0 32.0 41.0 18 36.512193224349616 38.0 35.0 40.0 31.0 41.0 19 36.37014579755915 37.0 35.0 40.0 31.0 41.0 20 36.20949962940627 37.0 35.0 40.0 31.0 41.0 21 36.02275215335675 37.0 34.0 40.0 31.0 41.0 22 35.88775889770232 36.0 34.0 40.0 30.0 41.0 23 35.8549127838725 36.0 34.0 40.0 30.0 41.0 24 35.83524829780084 36.0 34.0 40.0 30.0 41.0 25 35.76588880346563 36.0 34.0 40.0 30.0 41.0 26 35.641959957462284 36.0 34.0 40.0 30.0 41.0 27 35.51808267232609 36.0 34.0 40.0 30.0 41.0 28 35.46261606949668 36.0 34.0 40.0 30.0 41.0 29 35.42576570189532 36.0 34.0 40.0 30.0 41.0 30 35.25609408016794 36.0 34.0 40.0 29.0 41.0 31 35.00096630589405 36.0 34.0 40.0 28.0 41.0 32 34.75549974910114 35.0 34.0 40.0 27.0 41.0 33 34.47260967042478 35.0 33.0 40.0 25.0 41.0 34 34.22242713574779 35.0 33.0 40.0 24.0 41.0 35 33.980204309936056 35.0 33.0 40.0 23.0 41.0 36 33.717608036129434 35.0 33.0 40.0 22.0 41.0 37 33.53093513919132 35.0 33.0 40.0 22.0 41.0 38 33.46507902163255 35.0 32.0 40.0 22.0 41.0 39 33.46652917102095 35.0 33.0 40.0 22.0 41.0 40 33.232594754602495 35.0 32.0 39.0 21.0 41.0 41 33.165172936069126 35.0 32.0 39.0 20.0 41.0 42 33.024259848355804 35.0 32.0 39.0 19.0 41.0 43 32.93437268378917 35.0 32.0 39.0 19.0 41.0 44 32.746536905151025 35.0 31.0 39.0 18.0 41.0 45 32.71677109276813 35.0 31.0 39.0 19.0 41.0 46 32.59039678849456 35.0 31.0 39.0 18.0 41.0 47 32.54340274101253 35.0 31.0 39.0 18.0 41.0 48 32.50316592931558 35.0 31.0 39.0 18.0 41.0 49 32.50647825466465 35.0 31.0 38.0 18.0 40.0 50 32.34904727487006 35.0 31.0 38.0 18.0 40.0 51 32.11971742803346 35.0 31.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 6.0 12 9.0 13 10.0 14 38.0 15 99.0 16 271.0 17 820.0 18 1735.0 19 3208.0 20 5379.0 21 8628.0 22 13233.0 23 18954.0 24 26806.0 25 37240.0 26 46968.0 27 53421.0 28 56548.0 29 61457.0 30 70473.0 31 83092.0 32 102341.0 33 132628.0 34 228041.0 35 317615.0 36 150131.0 37 181290.0 38 248534.0 39 323145.0 40 69.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.753713993711415 23.783370699616516 29.000824053144527 15.462091253527547 2 31.34831667579724 26.349720788697123 30.02462952135863 12.277333014147013 3 28.59418375004028 24.938840525000114 33.394086152684615 13.072889572274985 4 25.761282392424235 27.227820770742888 31.872303988141 15.138592848691873 5 21.65183524461488 32.649031622463966 31.659016936824123 14.040116196097028 6 19.450554509504233 41.434220763377056 28.299642296484194 10.815582430634521 7 85.53031732951537 4.645726202588171 8.259084150097367 1.5648723177990875 8 86.44994222420691 3.852287322932156 7.408836243606682 2.288934209254255 9 82.84473273516589 4.948692333543566 9.51868851251502 2.6878864187755216 10 51.61201368204439 23.314765282963275 14.117319387346411 10.955901647645923 11 45.05347138141691 20.556350963773887 20.910049305079205 13.480128349729997 12 40.744271909915796 19.74845662672234 25.414443487908517 14.092827975453345 13 23.26453947398708 37.17685837795036 24.888936971443563 14.669665176618988 14 15.730944346489025 41.3119478498658 27.66995520649667 15.287152597148502 15 14.546149277917678 22.71707355249771 47.89567210971416 14.841105059870454 16 16.27859441393248 17.37596619080283 45.7215989393193 20.623840455945384 17 16.367214654335026 18.074615940594516 30.413868031802004 35.144301373268455 18 21.942463596646704 21.40719734461534 34.64618656747338 22.004152491264577 19 27.374170767750517 25.102684387645645 26.68500453459412 20.838140310009713 20 30.11978694313113 22.68484801053315 25.655812797223078 21.53955224911265 21 22.913188993596325 27.464632467693896 28.396595141309 21.22558339740078 22 23.00319032865449 24.256809947564438 26.005137672118924 26.734862051662144 23 19.589584704837055 29.663519305401458 24.483677762994947 26.263218226766533 24 20.86774177212859 23.694474240282847 36.90413821995314 18.533645767635427 25 18.204945239596903 24.076899350425148 34.47796923841837 23.24018617155958 26 17.474668422191428 31.57541467367035 28.55086341434221 22.39905348979601 27 18.56260271891501 30.85816618251626 29.6622763202114 20.916954778357326 28 16.468264746638187 27.029863870103444 37.90211721810707 18.5997541651513 29 17.11512344684397 23.926083814031003 37.22073115151069 21.738061587614343 30 20.384036387240524 28.366855569724564 32.06841942923961 19.180688613795294 31 29.28321187373112 25.301746164009593 24.403666345945794 21.01137561631349 32 30.30043412408675 26.210552483898734 25.02815131273047 18.46086207928404 33 28.12590058880669 26.010385831810297 25.76257141410282 20.1011421652802 34 21.104875724499237 26.121702061053593 28.931401028455156 23.842021185992017 35 21.55801288100949 24.284339767699876 31.010685068985676 23.146962282304955 36 30.64469498524531 22.91760849649432 27.13749718026508 19.300199337995295 37 22.534676984978294 29.012056956343596 29.24242354490169 19.21084251377642 38 22.01469484713584 30.985595182741843 24.170123239679768 22.82958673044255 39 21.4071052716383 29.1869035397456 27.322701973584262 22.083289215031833 40 23.31540979380257 24.35624876276937 26.972410332429487 25.355931110998576 41 18.346323295844286 22.375160552253718 28.615636753690975 30.662879398211025 42 22.895833237423982 24.563320888135937 24.481652157500033 28.059193716940044 43 23.289122958857188 25.056417716682244 26.496439077612916 25.158020246847652 44 21.00681800394993 28.556571938918786 27.194720535496437 23.24188952163485 45 19.596075849718485 33.21624719752876 24.28512238800473 22.90255456474802 46 23.499003310023525 29.930208683402466 26.931115602226324 19.639672404347685 47 22.380178529502484 26.16143155064704 28.2000653718137 23.258324548036775 48 23.870057407501186 22.395738862622512 29.9975600661084 23.736643663767904 49 20.96317541283221 22.255143426679986 32.333773749073515 24.44790741141429 50 20.040512109898305 28.865614886358927 28.48889830079321 22.60497470294956 51 19.414507938992447 31.127617749828513 24.745165017793102 24.712709293385938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1294.0 1 1877.0 2 2460.0 3 11863.5 4 21267.0 5 15784.5 6 10302.0 7 10907.5 8 11513.0 9 12273.0 10 13033.0 11 13236.0 12 13439.0 13 13014.0 14 12589.0 15 11997.5 16 11406.0 17 10706.0 18 10006.0 19 9824.0 20 9642.0 21 9664.5 22 9687.0 23 9305.0 24 8923.0 25 8844.0 26 10857.5 27 12950.0 28 14231.0 29 15512.0 30 19462.0 31 23412.0 32 27007.5 33 30603.0 34 36486.5 35 42370.0 36 44263.0 37 46156.0 38 58223.5 39 70291.0 40 101303.5 41 132316.0 42 162934.0 43 193552.0 44 200923.0 45 208294.0 46 205684.0 47 203074.0 48 192986.5 49 182899.0 50 177622.0 51 172345.0 52 157243.0 53 142141.0 54 125220.5 55 108300.0 56 101232.0 57 94164.0 58 91115.0 59 88066.0 60 84806.5 61 81547.0 62 71035.5 63 60524.0 64 51897.5 65 43271.0 66 35459.0 67 27647.0 68 22596.5 69 17546.0 70 14526.0 71 11506.0 72 10046.5 73 8587.0 74 6572.0 75 3405.5 76 2254.0 77 2170.0 78 2086.0 79 1467.5 80 849.0 81 777.5 82 706.0 83 441.5 84 177.0 85 132.5 86 88.0 87 64.0 88 40.0 89 28.0 90 16.0 91 15.0 92 14.0 93 9.0 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2172190.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.459661284453098 #Duplication Level Percentage of deduplicated Percentage of total 1 82.34742333567144 16.848003890953066 2 7.484294805074218 3.0625227332962086 3 2.5526873778037347 1.5668135734488948 4 1.2028687662189956 0.9844115010595461 5 0.7357342053771745 0.752643631870162 6 0.49967495946608864 0.6133908253799404 7 0.3630625010553439 0.5199695057675112 8 0.29462403446797025 0.4822326361178965 9 0.22537842500454142 0.41500496127747893 >10 2.365473764666948 10.889616043706612 >50 0.6784028208693738 10.064418817003785 >100 1.2361430937203248 50.70572773193015 >500 0.011521070488801884 1.5431619349210768 >1k 0.00225903342917684 0.5396075113874318 >5k 2.25903342917684E-4 0.4519299568604975 >10k+ 2.25903342917684E-4 0.5605447450198521 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12128 0.5583305327802817 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 9778 0.45014478475639796 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10952080619098697 0.0 2 0.0 0.0 0.0 0.325293827887984 0.0 3 0.0 0.0 0.0 0.4286917811057044 0.0 4 0.0 0.0 0.0 0.5971392926033174 0.0 5 0.0 0.0 0.0 0.9345407169722723 0.0 6 0.0 0.0 0.0 1.3019579318567898 0.0 7 0.0 0.0 0.0 1.5628006758156514 0.0 8 0.0 0.0 0.0 2.352556636390003 0.0 9 0.0 0.0 0.0 2.7802816512367703 0.0 10 0.0 0.0 0.0 3.5057246373475617 0.0 11 0.0 0.0 0.0 4.033164686330386 0.0 12 0.0 0.0 0.0 4.54688586173401 0.0 13 0.0 0.0 0.0 4.746454039471685 0.0 14 0.0 0.0 0.0 4.813575239735014 0.0 15 0.0 0.0 0.0 4.918492397073921 0.0 16 0.0 0.0 0.0 5.146695270671534 0.0 17 0.0 0.0 0.0 5.419277319203201 0.0 18 0.0 0.0 0.0 5.892210165777395 0.0 19 0.0 0.0 0.0 6.052463182318306 0.0 20 0.0 0.0 0.0 6.251064593797044 0.0 21 0.0 0.0 0.0 6.433967562690189 0.0 22 0.0 0.0 0.0 6.621520216923934 0.0 23 0.0 0.0 0.0 6.831860932975476 0.0 24 0.0 0.0 0.0 6.990318526464075 0.0 25 4.603648852080159E-5 0.0 0.0 7.109599068221472 0.0 26 4.603648852080159E-5 0.0 0.0 7.231457653336034 0.0 27 4.603648852080159E-5 0.0 0.0 7.3657000538626916 0.0 28 4.603648852080159E-5 0.0 0.0 7.493727528439041 0.0 29 4.603648852080159E-5 0.0 0.0 7.637499482089504 0.0 30 4.603648852080159E-5 0.0 0.0 7.826893595864082 0.0 31 4.603648852080159E-5 0.0 0.0 7.991243859883344 0.0 32 4.603648852080159E-5 0.0 0.0 8.138836842081034 0.0 33 4.603648852080159E-5 0.0 0.0 8.280399044282499 0.0 34 4.603648852080159E-5 0.0 0.0 8.433746587545288 0.0 35 4.603648852080159E-5 0.0 0.0 8.618260833536661 0.0 36 4.603648852080159E-5 0.0 0.0 8.78182847725107 0.0 37 4.603648852080159E-5 0.0 0.0 8.941022654556 0.0 38 4.603648852080159E-5 4.603648852080159E-5 0.0 9.101966218424723 0.0 39 4.603648852080159E-5 4.603648852080159E-5 0.0 9.267007029771797 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTACGAG 90 0.0 45.000004 1 TAATACG 75 0.0 45.0 1 CGTATAT 25 3.891957E-5 45.0 14 GCGCCTA 20 7.034675E-4 45.0 27 TACGGTG 20 7.034675E-4 45.0 29 CGCGAAA 25 3.891957E-5 45.0 37 CGTAGTC 25 3.891957E-5 45.0 13 TGCGAAC 35 1.2125929E-7 45.0 10 TATTCGA 35 1.2125929E-7 45.0 39 TCGCTAA 50 2.1827873E-11 45.0 15 TCGTCAG 25 3.891957E-5 45.0 30 ATGCGTA 25 3.891957E-5 45.0 34 CGTTTCA 40 6.8193913E-9 45.0 30 ACGACGT 40 6.8193913E-9 45.0 21 AGTCGTT 20 7.034675E-4 45.0 18 TAACTAC 25 3.891957E-5 45.0 10 CGAAGTA 35 1.2125929E-7 45.0 43 TACAACG 20 7.034675E-4 45.0 14 CGGACGT 20 7.034675E-4 45.0 33 CCGCTTA 30 2.1663982E-6 44.999996 41 >>END_MODULE