##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549182_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 650332 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.78183297146688 31.0 31.0 33.0 30.0 34.0 2 32.20086048356839 33.0 31.0 34.0 31.0 34.0 3 32.26730346961244 33.0 31.0 34.0 31.0 34.0 4 36.056282022105634 37.0 35.0 37.0 35.0 37.0 5 36.041998548433725 37.0 35.0 37.0 35.0 37.0 6 36.11420782000578 37.0 35.0 37.0 35.0 37.0 7 36.15158103860797 37.0 35.0 37.0 35.0 37.0 8 36.0211722627827 37.0 35.0 37.0 35.0 37.0 9 37.87104740348007 39.0 38.0 39.0 35.0 39.0 10 37.730408468290044 39.0 37.0 39.0 35.0 39.0 11 37.54780635121753 39.0 37.0 39.0 35.0 39.0 12 36.88395773235824 39.0 35.0 39.0 34.0 39.0 13 36.6358706014774 39.0 35.0 39.0 33.0 39.0 14 37.77954490936937 40.0 35.0 41.0 33.0 41.0 15 37.88856768542836 40.0 35.0 41.0 33.0 41.0 16 37.99811019602296 40.0 35.0 41.0 34.0 41.0 17 37.861544564929915 40.0 35.0 41.0 34.0 41.0 18 37.79294268158417 39.0 36.0 41.0 34.0 41.0 19 37.65425813276911 39.0 36.0 41.0 34.0 41.0 20 37.40240061999102 39.0 35.0 41.0 34.0 41.0 21 37.36907456499142 39.0 35.0 41.0 34.0 41.0 22 37.26781551576733 39.0 35.0 41.0 33.0 41.0 23 37.156037224064015 38.0 35.0 41.0 33.0 41.0 24 37.207232613495876 38.0 35.0 41.0 33.0 41.0 25 37.19744684253581 38.0 35.0 41.0 33.0 41.0 26 37.11245179385298 38.0 35.0 41.0 33.0 41.0 27 36.9898774779651 38.0 35.0 41.0 33.0 41.0 28 36.94054421433975 38.0 35.0 41.0 33.0 41.0 29 36.85627802414766 38.0 35.0 41.0 33.0 41.0 30 36.75149923423728 38.0 35.0 41.0 33.0 41.0 31 36.55479047624905 38.0 35.0 41.0 33.0 41.0 32 36.24957560138514 38.0 35.0 41.0 32.0 41.0 33 35.98249355713697 38.0 35.0 41.0 31.0 41.0 34 35.67122638898286 38.0 35.0 41.0 30.0 41.0 35 35.41212949693387 38.0 35.0 40.0 29.0 41.0 36 35.22805428611847 38.0 35.0 40.0 27.0 41.0 37 35.07438200795901 37.0 35.0 40.0 26.0 41.0 38 34.981512519759136 37.0 35.0 40.0 26.0 41.0 39 34.95133255014362 37.0 35.0 40.0 26.0 41.0 40 34.70915470867188 37.0 34.0 40.0 24.0 41.0 41 34.6437019860625 36.0 34.0 40.0 24.0 41.0 42 34.5440590344624 36.0 34.0 40.0 23.0 41.0 43 34.469629358543024 36.0 34.0 40.0 23.0 41.0 44 34.278087192387886 36.0 34.0 40.0 23.0 41.0 45 34.21772571548071 35.0 34.0 40.0 23.0 41.0 46 34.1277116918743 35.0 34.0 40.0 23.0 41.0 47 34.056872489743704 35.0 34.0 40.0 23.0 41.0 48 34.03650135623035 35.0 34.0 40.0 23.0 41.0 49 34.03278479299804 35.0 34.0 40.0 23.0 41.0 50 33.87072756684278 35.0 34.0 40.0 23.0 41.0 51 33.715918946015265 35.0 34.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 1.0 12 2.0 13 1.0 14 9.0 15 12.0 16 33.0 17 112.0 18 280.0 19 456.0 20 778.0 21 1458.0 22 2346.0 23 3446.0 24 5152.0 25 7684.0 26 10416.0 27 11735.0 28 10949.0 29 10382.0 30 10839.0 31 13171.0 32 17299.0 33 25062.0 34 58018.0 35 100633.0 36 42865.0 37 59781.0 38 96000.0 39 161366.0 40 45.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.05896065394291 22.834951993750884 28.085500944133152 16.020586408173056 2 33.072030901139726 26.422350430241785 28.16515256822669 12.3404661003918 3 27.539625914148463 26.58780438299207 33.364189367892095 12.50838033496737 4 26.12465632938253 25.886162759944153 33.82579974536083 14.163381165312487 5 23.842283633590228 30.803958593456883 30.92128328300007 14.432474489952824 6 19.7543716132683 41.64964971737513 28.33675722554019 10.25922144381639 7 82.34824674166425 4.708518110749586 11.206276178936298 1.7369589686498588 8 83.76952079860747 5.322204658543636 8.967265950314609 1.9410085925342748 9 79.85567371742434 4.971614498440796 10.60366089935602 4.569050884778851 10 49.278061051893495 21.96401222760067 16.04026866277532 12.717658057730514 11 42.485838002743215 20.083126772171752 22.589231346450735 14.841803878634297 12 36.976805693092146 19.665340164715868 27.4073857660395 15.950468376152488 13 22.994255241937964 33.490586346666014 28.07858140149954 15.436577009896485 14 17.081121642484145 36.953279248137875 29.738810330723386 16.226788778654594 15 15.29065154413438 21.829619332894584 45.79691603673201 17.082813086239028 16 17.23642693270514 16.817871487178856 42.81659214062971 23.129109439486292 17 17.487990749340337 18.5580595757244 31.269105626049466 32.6848440488858 18 21.759193765645854 22.148687132110982 34.17254571511167 21.919573387131496 19 27.977556079048853 23.51475861559942 26.563816635195565 21.943868670156167 20 29.87304945781539 21.705528868331868 27.1659706119336 21.255451061919143 21 23.648690207463265 26.692366360566606 28.886783981105037 20.772159450865097 22 22.483592995577645 22.160681006009238 27.288523400355512 28.067202598057605 23 21.02003284476237 28.02414766611515 26.262278343984303 24.693541145138177 24 21.423057761266552 22.390717356673207 36.235030722769295 19.951194159290946 25 20.000399795796607 24.49087542978048 33.44983792893476 22.05888684548815 26 18.314952977863612 28.496675544183585 29.270587945849197 23.917783532103602 27 19.421618496398764 28.569561393257597 30.233173209991204 21.775646900352434 28 16.83909141792192 26.374990005105087 37.46763191723612 19.31828665973687 29 18.779331172385795 23.328084732106063 35.96762884188384 21.924955253624304 30 20.22597688565225 28.411026983140918 31.789608999710918 19.573387131495913 31 28.19805883763985 25.528653057207702 24.806252806258957 21.46703529889349 32 28.646906503139935 25.659509296789945 26.48016705313594 19.21341714693418 33 26.88165429349932 26.397901379603034 25.74869451295646 20.971749813941187 34 20.30378329837683 26.222913834779778 28.87217605776742 24.60112680907598 35 21.263908280693553 25.06627384166856 30.14137394438533 23.528443933252554 36 28.347674726139882 26.645005935429904 25.381343682918878 19.625975655511336 37 21.867907468800553 30.434762552050337 26.72296611576856 20.97436386338055 38 22.341050417325302 30.73261042052367 24.09077209794382 22.835567064207204 39 21.576979142960827 28.486834416882456 26.052846853607083 23.88333958654964 40 24.334801301489087 24.256072283080027 26.698978367972053 24.710148047458837 41 18.811468603728557 24.522551558281 27.320507064084193 29.345472773906252 42 22.059809451172633 25.78867409261731 24.740440267432636 27.41107618877742 43 22.4326959153171 25.81973515066151 25.78759771931875 25.959971214702644 44 21.010191717461236 26.75556484995356 29.082068850986882 23.152174581598324 45 20.178770228129633 32.01134189921456 24.638492339297464 23.171395533358346 46 23.009478235731905 29.937170552886833 26.8041554160029 20.249195795378363 47 22.787745336228266 26.38006433636973 27.59006169156677 23.242128635835236 48 22.331363057638253 25.234034308630054 29.24121833155988 23.19338430217181 49 21.054630557930412 23.59610168344784 31.968133199658023 23.38113455896373 50 20.722646279131276 28.072738232164497 28.035218934328928 23.169396554375304 51 20.109882337021705 29.427123376982834 26.211996334180082 24.250997951815382 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 401.0 1 742.5 2 1084.0 3 5793.5 4 10503.0 5 7491.0 6 4479.0 7 4571.5 8 4664.0 9 4699.5 10 4735.0 11 4675.0 12 4615.0 13 4361.5 14 4108.0 15 3883.5 16 3659.0 17 3375.5 18 3092.0 19 2904.0 20 2716.0 21 2644.0 22 2572.0 23 2697.0 24 2822.0 25 2908.5 26 3735.0 27 4475.0 28 4893.5 29 5312.0 30 6452.0 31 7592.0 32 9191.5 33 10791.0 34 12689.5 35 14588.0 36 14961.5 37 15335.0 38 18318.5 39 21302.0 40 27960.5 41 34619.0 42 41089.5 43 47560.0 44 48706.5 45 49853.0 46 53137.5 47 56422.0 48 52286.0 49 48150.0 50 46320.5 51 44491.0 52 42314.5 53 40138.0 54 37387.0 55 34636.0 56 32769.0 57 30902.0 58 30165.0 59 29428.0 60 28178.5 61 26929.0 62 25101.5 63 23274.0 64 19889.5 65 16505.0 66 14260.0 67 12015.0 68 10271.0 69 8527.0 70 7122.5 71 5718.0 72 4843.5 73 3969.0 74 3285.5 75 2086.5 76 1571.0 77 1082.5 78 594.0 79 434.5 80 275.0 81 222.0 82 169.0 83 121.5 84 74.0 85 52.5 86 31.0 87 20.5 88 10.0 89 10.5 90 11.0 91 13.5 92 16.0 93 8.5 94 1.0 95 1.5 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 650332.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.55061633352053 #Duplication Level Percentage of deduplicated Percentage of total 1 76.8722064089448 16.566434270303677 2 6.286485351262596 2.709552677827145 3 2.520113302183463 1.629299846770719 4 1.4704020930010584 1.2675228544908554 5 1.050596573971962 1.1320501843490438 6 0.8230935920852509 1.0642904525765096 7 0.7554413606975866 1.139615884880647 8 0.5677343618345858 0.9788020329002624 9 0.5125872487335091 0.9941914021419642 >10 7.136940761176827 38.00978642235969 >50 1.8321235730655452 26.600067619802797 >100 0.16512701731492038 5.417990259966783 >500 0.003574177863959315 0.47247586372812406 >1k 0.0028593422911674525 1.1613940452058453 >5k 7.148355727918631E-4 0.8565261826959145 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5560 0.8549479342858725 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCG 2621 0.4030249165041856 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC 2161 0.33229181402729685 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGC 1723 0.26494159906017234 No Hit GAATCTGTCTCTTATACACATCTGACGCTAACGCGATCGTATGCCGTCTTC 1034 0.15899571295891946 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 738 0.11348049919118235 No Hit GTACAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 682 0.10486951280269155 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.03321380464132166 0.0 2 0.0 0.0 0.0 0.15622789590547598 0.0 3 0.0 0.0 0.0 0.22619216031196374 0.0 4 0.0 0.0 0.0 0.39595160625649667 0.0 5 0.0 0.0 0.0 0.766839091417922 0.0 6 0.0 0.0 0.0 0.993338786958046 0.0 7 0.0 0.0 0.0 1.1801664380654804 0.0 8 0.0 0.0 0.0 1.5702748749869297 0.0 9 0.0 0.0 0.0 1.7417257646863449 0.0 10 0.0 0.0 0.0 2.458590381528204 0.0 11 0.0 0.0 0.0 2.7050798668987532 0.0 12 0.0 0.0 0.0 3.1986739080961724 0.0 13 0.0 0.0 0.0 3.320150323219525 0.0 14 0.0 0.0 0.0 3.3739689881475923 0.0 15 0.0 0.0 0.0 3.479607339020685 0.0 16 0.0 0.0 0.0 3.624917734326467 0.0 17 0.0 0.0 0.0 3.7614633756296785 0.0 18 0.0 0.0 0.0 4.018870361599921 0.0 19 0.0 0.0 0.0 4.171254067153392 0.0 20 0.0 0.0 0.0 4.300265095366674 0.0 21 0.0 0.0 0.0 4.40820996045097 0.0 22 0.0 0.0 0.0 4.518307572132388 0.0 23 0.0 0.0 0.0 4.6400915224839006 0.0 24 0.0 0.0 0.0 4.726662689211049 0.0 25 0.0 0.0 0.0 4.800009841127301 0.0 26 0.0 0.0 0.0 4.87105047883235 0.0 27 0.0 0.0 0.0 4.9565452722609376 0.0 28 0.0 0.0 0.0 5.032660241230633 0.0 29 0.0 0.0 0.0 5.114310844307216 0.0 30 0.0 0.0 0.0 5.228560181568799 0.0 31 0.0 0.0 0.0 5.3097494818031405 0.0 32 0.0 0.0 0.0 5.39708948660069 0.0 33 0.0 0.0 0.0 5.490887731189607 0.0 34 0.0 0.0 0.0 5.582686996795483 0.0 35 0.0 0.0 0.0 5.714465842062208 0.0 36 0.0 0.0 0.0 5.812415812231291 0.0 37 0.0 0.0 0.0 5.909904479558134 0.0 38 0.0 0.0 0.0 6.006931844042735 0.0 39 0.0 0.0 0.0 6.10626572273854 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 55 1.8189894E-12 45.0 25 CTCACGT 55 1.8189894E-12 45.0 45 GATAATC 20 7.031025E-4 45.0 9 GGTCGAG 20 7.031025E-4 45.0 1 CGACGGT 55 1.8189894E-12 45.0 28 CTATCGC 25 3.888931E-5 45.0 44 TAGACCC 20 7.031025E-4 45.0 39 AACCACG 25 3.888931E-5 45.0 33 TAAACGG 40 6.8066583E-9 45.0 2 CACGACC 25 3.888931E-5 45.0 27 ACGGGTA 100 0.0 45.0 5 TCGGCGA 20 7.031025E-4 45.0 23 ACTAGGT 20 7.031025E-4 45.0 3 CTTGCGA 20 7.031025E-4 45.0 13 TCTCGAG 25 3.888931E-5 45.0 1 CGAATTA 20 7.031025E-4 45.0 44 ATGGTCG 40 6.8066583E-9 45.0 44 GTATATC 20 7.031025E-4 45.0 24 CTCGAGG 40 6.8066583E-9 45.0 2 GGTCTAA 55 1.8189894E-12 45.0 32 >>END_MODULE