SRR3549180_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549180_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	676081
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	3003	0.4441775467732416	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2791	0.4128203573240484	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	775	0.11463123501473935	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGTCCGA	20	7.0312223E-4	45.000004	11
ACACGGC	20	7.0312223E-4	45.000004	28
CGAAATA	25	3.8890947E-5	45.000004	11
CACGGCA	20	7.0312223E-4	45.000004	36
TAACGGT	25	3.8890947E-5	45.000004	36
TAACGGA	20	7.0312223E-4	45.000004	3
TAACGCC	20	7.0312223E-4	45.000004	12
TGCGATG	20	7.0312223E-4	45.000004	1
TCGTCAG	25	3.8890947E-5	45.000004	1
GCGATAC	20	7.0312223E-4	45.000004	9
AACCTAT	25	3.8890947E-5	45.000004	31
ATAACGC	20	7.0312223E-4	45.000004	11
CCGAACT	20	7.0312223E-4	45.000004	39
GCGTGGC	25	3.8890947E-5	45.000004	3
CAACTGA	20	7.0312223E-4	45.000004	41
ATCGGCT	20	7.0312223E-4	45.000004	10
CCCGGTT	25	3.8890947E-5	45.000004	18
CGTTTAG	25	3.8890947E-5	45.000004	30
TTATTAG	40	6.8084773E-9	45.000004	1
TCGAAAT	20	7.0312223E-4	45.000004	17