SRR3549176_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549176_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1446920
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	7215	0.49864539850164485	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3565	0.24638542559367485	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2930	0.2024991015398225	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	1525	0.10539629005059022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGCGAG	115	0.0	45.000004	1
GGTACGA	40	6.8175723E-9	45.0	8
CTACTCG	20	7.0338935E-4	45.0	45
TTCACGG	35	1.2122291E-7	45.0	1
ATAGCCG	25	3.8913087E-5	45.0	34
CCAATCG	25	3.8913087E-5	45.0	41
TGTATCG	20	7.0338935E-4	45.0	1
CACGATA	25	3.8913087E-5	45.0	10
ACGGGTA	20	7.0338935E-4	45.0	5
CCGTATT	25	3.8913087E-5	45.0	40
TATCTCG	50	2.1827873E-11	45.0	1
TACGAGT	25	3.8913087E-5	45.0	28
TGCGAAC	25	3.8913087E-5	45.0	38
GTCGTAC	20	7.0338935E-4	45.0	30
CGTACTC	20	7.0338935E-4	45.0	32
CTACCGA	20	7.0338935E-4	45.0	33
TCGTACA	35	1.2122291E-7	45.0	34
CGTAATT	45	3.8562575E-10	45.0	33
CGTAAGG	165	0.0	45.0	2
GTATACG	25	3.8913087E-5	45.0	1