SRR3549173_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549173_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1855460
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	8297	0.4471667403231544	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3991	0.2150949090791502	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2362	0.1272999687409052	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2305	0.12422795425393164	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2043	0.11010746661205308	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATCG	20	7.034407E-4	45.000004	21
CGCGATA	20	7.034407E-4	45.000004	11
GTAATCG	35	1.2124656E-7	45.000004	1
CGTTAGC	20	7.034407E-4	45.000004	40
TAGCACG	35	1.2124656E-7	45.000004	1
GCCGAAT	20	7.034407E-4	45.000004	45
CGTAGCT	40	6.8193913E-9	45.000004	19
TATTACG	65	0.0	45.000004	1
GTCCGAT	20	7.034407E-4	45.000004	30
TCGTATA	20	7.034407E-4	45.000004	29
GCGATAC	125	0.0	45.000004	9
GGTACGA	25	3.891736E-5	45.0	6
CTATACG	45	3.8562575E-10	45.0	1
TGTTGCG	100	0.0	45.0	1
GATTCGC	25	3.891736E-5	45.0	41
GTACGAC	25	3.891736E-5	45.0	19
CAAGTCG	30	2.1662272E-6	44.999996	1
GACCGTT	30	2.1662272E-6	44.999996	32
ATCCGTT	30	2.1662272E-6	44.999996	11
TCGTAGA	30	2.1662272E-6	44.999996	24