SRR3549172_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549172_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1912734
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	6868	0.35906717818578016	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6353	0.3321423679403409	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	5438	0.28430508371786145	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	4417	0.23092599389146637	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	2134	0.11156804866750943	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	2020	0.10560799358405298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGTCA	25	3.8917802E-5	45.000004	1
TATTACG	40	6.8193913E-9	45.0	1
TCGTACA	35	1.212502E-7	45.0	34
TCGTAAT	20	7.0344645E-4	45.0	45
TCGACGA	35	1.212502E-7	45.0	2
GTACGAC	20	7.0344645E-4	45.0	37
CAAATCG	60	0.0	44.999996	1
TATCGTG	30	2.1662618E-6	44.999996	1
GCGATAT	110	0.0	42.954544	9
TACGTAG	145	0.0	41.89655	1
CGTTTTT	5445	0.0	40.7438	1
ACGTAAG	105	0.0	40.714287	1
GTGTCGA	50	1.0822987E-9	40.500004	26
CCGTGTA	45	1.929402E-8	40.0	36
GCTCGAT	45	1.929402E-8	40.0	26
TGTAACG	45	1.929402E-8	40.0	1
AAATGCG	130	0.0	39.80769	1
TCATATG	75	0.0	39.0	1
ATGGGAC	1015	0.0	38.793102	5
CACGGGC	175	0.0	38.571426	4