##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549155_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 463560 Sequences flagged as poor quality 0 Sequence length 50 %GC 42 >>END_MODULE >>Per base sequence quality fail #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 21.173054189317455 16.0 16.0 28.0 16.0 31.0 2 21.151130382259037 16.0 16.0 30.0 10.0 31.0 3 22.00998791957891 23.0 16.0 30.0 10.0 31.0 4 26.776997583915783 28.0 19.0 32.0 19.0 35.0 5 30.84527137803089 32.0 28.0 35.0 25.0 35.0 6 31.33898740184658 33.0 30.0 35.0 25.0 35.0 7 29.973304426611442 32.0 28.0 35.0 17.0 35.0 8 30.090074639744586 32.0 28.0 35.0 17.0 35.0 9 23.077228406247304 17.0 17.0 30.0 16.0 35.0 10 25.276721460005177 27.0 17.0 34.0 17.0 37.0 11 27.34800673052032 28.0 17.0 35.0 17.0 39.0 12 27.15811545431012 28.0 17.0 35.0 15.0 39.0 13 27.462270256277506 31.0 17.0 37.0 11.0 39.0 14 30.612680127707307 32.0 27.0 37.0 17.0 40.0 15 27.734386055742515 30.0 17.0 36.0 16.0 40.0 16 29.180824488739322 31.0 25.0 36.0 17.0 39.0 17 27.417956683061522 30.0 17.0 36.0 16.0 39.0 18 27.81642937268099 31.0 17.0 36.0 16.0 39.0 19 26.446822417809994 29.0 18.0 35.0 10.0 37.0 20 26.18727457071361 30.0 18.0 35.0 10.0 37.0 21 28.91695573388558 32.0 25.0 35.0 15.0 38.0 22 30.689714384329967 33.0 27.0 36.0 16.0 38.0 23 30.556622659418412 33.0 27.0 36.0 17.0 39.0 24 31.96792863922685 35.0 30.0 37.0 19.0 39.0 25 31.81712615411166 34.0 30.0 37.0 21.0 39.0 26 25.308009750625594 32.0 15.0 36.0 0.0 38.0 27 27.7646906549314 32.0 18.0 36.0 10.0 39.0 28 28.801026835792563 33.0 23.0 36.0 12.0 38.0 29 29.682929933557684 33.0 25.0 36.0 14.0 38.0 30 29.715689446889293 33.0 26.0 36.0 11.0 38.0 31 28.54274743291052 32.0 24.0 35.0 11.0 38.0 32 28.576991112261627 33.0 24.0 36.0 9.0 38.0 33 28.716327983432567 33.0 24.0 36.0 9.0 38.0 34 27.719520666148934 33.0 21.0 36.0 8.0 38.0 35 26.909105617395806 32.0 18.0 35.0 7.0 38.0 36 27.19357149020623 32.0 21.0 35.0 8.0 38.0 37 26.854592717231856 32.0 18.0 35.0 8.0 38.0 38 26.83525541461731 31.0 19.0 35.0 8.0 38.0 39 26.743953317801363 31.0 19.0 35.0 8.0 38.0 40 26.60851885408577 31.0 18.0 35.0 8.0 38.0 41 25.00055224782121 29.0 15.0 34.0 7.0 37.0 42 24.868716023815686 29.0 15.0 34.0 7.0 37.0 43 25.203190525498318 29.0 15.0 35.0 7.0 37.0 44 26.251604970230392 31.0 18.0 35.0 7.0 37.0 45 25.959554318750538 31.0 18.0 35.0 7.0 37.0 46 24.39362542065752 28.0 15.0 34.0 7.0 36.0 47 24.88291051859522 29.0 15.0 34.0 7.0 36.0 48 25.512919578911035 30.0 18.0 34.0 7.0 37.0 49 24.7768185348175 29.0 15.0 34.0 7.0 37.0 50 25.802955388730695 30.0 15.0 35.0 7.0 38.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 51.0 13 482.0 14 1903.0 15 4631.0 16 7482.0 17 10124.0 18 11490.0 19 12045.0 20 13318.0 21 14398.0 22 16393.0 23 19614.0 24 23890.0 25 30043.0 26 35589.0 27 39355.0 28 39825.0 29 36107.0 30 33668.0 31 30844.0 32 26842.0 33 22205.0 34 16688.0 35 11305.0 36 4400.0 37 840.0 38 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 60.27633963241005 10.643498144792476 8.172836310294244 20.907325912503236 2 25.43726809905945 58.99063767365605 8.760031063939945 6.8120631633445505 3 10.598628009319182 57.23983950297696 26.03460177754767 6.1269307101561825 4 11.208257830701527 11.54478384675123 68.64440417637415 8.602554146173096 5 44.330615238588315 12.93187505393045 28.39438260419363 14.3431271032876 6 9.885235999654846 51.560100094917594 31.93782897575287 6.616834929674692 7 28.6122616274053 5.406635602726723 61.80753300543619 4.173569764431789 8 24.684830442661145 37.88225903874364 28.729830011217533 8.703080507377686 9 18.771680041418588 4.220812839761843 16.21667098110277 60.790836137716795 10 39.5154888256105 11.702476486323238 33.26063508499439 15.521399603071877 11 38.306799551298646 12.580679955129865 32.56450081974286 16.54801967382863 12 15.79018897230132 10.892872551557511 39.80261454827854 33.51432392786263 13 26.20631633445509 19.70359823971007 45.75934075416343 8.330744671671413 14 11.632151177841056 42.31879368366555 29.83346276641643 16.21559237207697 15 4.025153162481663 13.81504012425576 37.290102683579256 44.86970402968332 16 4.284019328673742 14.89839502976961 26.937613253947706 53.879972387608944 17 5.5356372422124425 27.23121063077056 38.70113901113125 28.53201311588575 18 6.099749762706015 22.73103805332643 33.53870049184572 37.630511692121836 19 7.734489602208991 23.48779014582794 30.36823712140823 38.40948313055484 20 14.302787125722668 22.96660626456122 42.87276727931659 19.857839330399514 21 12.707524376563983 35.192855293813096 33.70480628181897 18.39481404780395 22 7.555009060315816 17.051082923461905 46.33876952282336 29.055138493398914 23 19.03507636551903 29.063767365605315 37.081931141599796 14.819225127275864 24 17.523729398567607 27.13996030718785 31.31568728967124 24.020623004573302 25 8.650444386918629 44.59444300629908 28.835965139356283 17.919147467426008 26 9.572007938562429 31.58016222279748 35.38765208387264 23.460177754767454 27 21.526231771507465 27.665890068168093 29.419924065924587 21.38795409439986 28 7.429243247907498 30.551600655794285 42.24695832254724 19.77219777375097 29 17.19691086375011 28.226982483389424 37.01225299853309 17.56385365432738 30 7.9590560013806195 43.50893088273363 36.7960997497627 11.735913366123048 31 20.09621192510139 17.643670722236603 32.03576667529554 30.22435067736647 32 28.306368107688325 31.62848390715334 25.415480196738287 14.649667788420054 33 18.617007507118817 24.416688238847183 25.21291742169299 31.753386832341015 34 17.873414444732074 26.05293813098628 25.812839761843126 30.26080766243852 35 17.26874622486841 33.20562602467857 25.771636897057554 23.75399085339546 36 22.690482353956337 28.278108551212355 29.200750711881955 19.83065838294935 37 16.392268530503063 27.070066442315987 33.96475105703685 22.5729139701441 38 15.965570799896453 28.898524462852706 26.039994822676675 29.095909914574165 39 24.87013547329364 21.22141686081629 26.762878591768057 27.14556907412201 40 11.139226853050307 34.010699801535935 31.166623522305635 23.68344982310812 41 17.622529985330917 22.680559150918974 25.077228406247304 34.619682457502805 42 14.70553973595651 24.44235913366123 35.9890844766589 24.863016653723356 43 27.548537406161017 21.916472517042024 21.922728449391666 28.6122616274053 44 15.673052032099404 20.438346708085252 31.80861161446199 32.07998964535335 45 15.840883596513935 19.20247648632324 29.5349037880749 35.421736129087925 46 31.93675036672707 21.943869186297352 23.78332901889723 22.33605142807835 47 11.242341875916818 21.862326343946847 42.966821986366384 23.928509793769955 48 17.554793338510656 22.221071705928036 25.513849339891276 34.71028561567003 49 13.678488221589438 18.069505565622574 40.572094227284495 27.679911985503498 50 19.532099404607816 17.105229096557082 33.61463456726206 29.74803693157304 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5961.0 1 5189.5 2 4418.0 3 11740.0 4 19062.0 5 14030.5 6 8999.0 7 7809.5 8 6620.0 9 6754.5 10 6889.0 11 6748.5 12 6608.0 13 6354.5 14 6101.0 15 5811.0 16 5521.0 17 5264.5 18 5008.0 19 4538.5 20 4069.0 21 3802.5 22 3536.0 23 3129.0 24 2722.0 25 2630.0 26 2538.0 27 2443.0 28 2348.0 29 2351.0 30 2354.0 31 2349.5 32 2345.0 33 2523.0 34 2701.0 35 2973.5 36 3246.0 37 3409.0 38 3572.0 39 4812.5 40 6053.0 41 12111.0 42 18169.0 43 33354.5 44 48540.0 45 57818.5 46 67097.0 47 59344.0 48 51591.0 49 48173.0 50 44755.0 51 38175.5 52 31596.0 53 25411.5 54 19227.0 55 16663.0 56 14099.0 57 13156.5 58 12214.0 59 11286.0 60 10358.0 61 9498.0 62 8638.0 63 7831.0 64 7024.0 65 6144.0 66 5264.0 67 4562.5 68 3861.0 69 3328.5 70 2796.0 71 2482.0 72 2168.0 73 1906.5 74 1645.0 75 1430.0 76 1215.0 77 1082.0 78 949.0 79 807.0 80 665.0 81 562.5 82 460.0 83 383.5 84 307.0 85 228.0 86 149.0 87 111.0 88 73.0 89 45.0 90 17.0 91 12.0 92 7.0 93 5.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 463560.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.51548445408894 #Duplication Level Percentage of deduplicated Percentage of total 1 87.65399391940727 37.266520158193664 2 5.600946797403326 4.762539329863608 3 2.0292511667768887 2.5882378930363394 4 1.0526167768641894 1.7901004885153065 5 0.6881442428562965 1.462839292966384 6 0.48066265036250544 1.2261363263488974 7 0.3426049640800049 1.0196211216966007 8 0.28852345069771373 0.9813371426222998 9 0.22743256420869204 0.870246508317141 >10 1.4442832224429065 11.186368227864513 >50 0.09715809523923646 2.8955191442295103 >100 0.06995382857225024 5.530920729402941 >500 0.009438214966097256 2.776790349124966 >1k 0.010548593197402815 9.501372145811565 >5k 0.003331134693916679 9.949850695908253 >10k+ 0.0011103782313055595 6.191600446098009 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGCCTCTTATACACATCTGACGCAATGACAGTCGTATG 14589 3.1471654154801962 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11642 2.5114332556734835 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 8547 1.8437742687030805 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT 7894 1.7029079299335577 No Hit GAATGATACCTGTCCCTTATACACATCTGACGCAATGACAGTCGTATGCC 7465 1.6103632755198896 No Hit GAATCTTTCTCTTACCCACATCTGACGCAATGACAGTCGTATGCCGTCTT 7051 1.5210544481836223 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATG 6077 1.3109414099577186 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5119 1.1042799206143756 No Hit GAACTGTCCCTTATCCACATCTGACGCAATGACAGTCGTATGCCGTCTTC 4991 1.0766675295538872 No Hit GAATCTGTCTCTTACCCACATCTGACGCAATGACAGTCGTATGCCGTCTT 3137 0.6767193027871257 No Hit GAACTGTCCCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 2801 0.6042367762533437 No Hit GCTGTCTCCTATACCCATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 2554 0.5509534903788075 No Hit GAATGACTCTCTCTCCTACACATCTGACGCAATGACAGTCGTATGCCGTC 2541 0.5481491069117267 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTTTT 2485 0.5360686858227629 No Hit GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCCT 2290 0.4940029338165502 No Hit GAATGATACCTGGCCCTTATACACATCTGACGCAATGACAGTCGTATGCC 2278 0.4914142721546294 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGACAG 2215 0.47782379842954525 No Hit GAATGACTCTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTC 1985 0.4282077832427302 No Hit GAATCTTTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTT 1845 0.39800673052032104 No Hit GAATGATCCGTCTCCCATACACATCTGACGCAATGACAGTCGTATGCCGT 1782 0.3844162567952369 No Hit GAATGATACGGCGACCGTCTCTTATACACATCTGACGCAATGACAGTCGT 1694 0.3654327379411511 No Hit GCTGTCTCCTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 1608 0.34688066269738543 No Hit GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG 1493 0.3220726551039779 No Hit GAATGCTGCCTCTTCCACACATCTGACGCAATGACAGTCGTATGCCGTCT 1277 0.27547674518940374 No Hit GAATCTTTCTCTTACCCCCATCTGACGCAATGACAGTCGTATGCCGTCTT 1159 0.250021572180516 No Hit GAACTGTCCCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCCTC 1060 0.2286651134696695 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAATGACAGTCG 1058 0.22823366985934937 No Hit CGTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 950 0.2049357149020623 No Hit GAATGATACGGCGCCCTCTCTTATACACATCTGACGCAATGACAGTCGTA 928 0.20018983518854086 No Hit AAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 891 0.19220812839761844 No Hit GAATGATACGGCGACCACCCGTCTCTTATACACATCTGACGCAATGACAG 843 0.1818534817499353 No Hit GAATGCTGCCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT 837 0.18055915091897487 No Hit GAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC 772 0.16653723358357062 No Hit GAATGATCCGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGT 726 0.15661403054620762 No Hit GAATCTGTCTCTTACACACATCTGACGCAATGACAGTCGTATGCCGTCTT 669 0.1443178876520839 No Hit GAATGATACGGCTGCCTCTTATACAAATCTGACGCAATGACAGTCGTATG 627 0.1352575718353611 No Hit GAATGACTCGCTCTCCTACACATCTGACGCAATGACAGTCGTATGCCGTC 616 0.1328846319786004 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 605 0.13051169212183966 No Hit CGCTGTCTCTTATACCCATCTGACGCAATGACAGTCGTATGCCGTCTTCT 593 0.12792303045991887 No Hit CGTTTTTTCTTTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 586 0.12641297782379843 No Hit GAATGATACGGCTGCCTCCTATACACATCTGACGCAATGACAGTCGTATG 567 0.12231426352575718 No Hit GAATGATACCTGGCTCTTATACACATCTGACGCAATGACAGTCGTATGCC 520 0.1121753386832341 No Hit GAATCTGTCTCTTATCCACATCTGACGCAATGACAGTCGTATGCCGTCTT 517 0.1115281732677539 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAATGACAGTCGT 517 0.1115281732677539 No Hit GAATGATACGGCGACCGCCTCTTATACACATCTGACGCAATGACAGTCGT 472 0.10182069203555094 No Hit GAACTGTCCCTTATCCACCTCTGACGCAATGACAGTCGTATGCCGTCTTC 469 0.10117352662007074 No Hit AAAAAAAACAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 469 0.10117352662007074 No Hit GAATCTTTCTCTTACACACATCTGACGCAATGACAGTCGTATGCCGTCTT 468 0.1009578048149107 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09729053412718958 0.0 2 0.0 0.0 0.0 0.7213737164552593 0.0 3 0.0 0.0 0.0 1.3607731469496938 0.0 4 0.0 0.0 0.0 1.7589955992751747 0.0 5 0.0 0.0 0.0 5.905815859867116 0.0 6 0.0 0.0 0.0 6.050133747519199 0.0 7 0.0 0.0 0.0 6.193157304340323 0.0 8 0.0 0.0 0.0 6.387091207179222 0.0 9 0.0 0.0 0.0 6.568513245318837 0.0 10 0.0 0.0 0.0 9.675338683234102 0.0 11 0.0 0.0 0.0 9.829148330313227 0.0 12 0.0 0.0 0.0 12.273492104581932 0.0 13 0.0 0.0 0.0 12.39817930796445 0.0 14 0.0 0.0 0.0 12.487272413495557 0.0 15 0.0 0.0 0.0 12.751100181206317 0.0 16 0.0 0.0 0.0 13.172620588489085 0.0 17 0.0 0.0 0.0 13.294503408404521 0.0 18 0.0 0.0 0.0 13.392009664336872 0.0 19 0.0 0.0 0.0 14.386271464319613 0.0 20 0.0 0.0 0.0 14.54115972042454 0.0 21 0.0 0.0 0.0 14.595521615324877 0.0 22 0.0 0.0 0.0 14.772197773750971 0.0 23 0.0 0.0 0.0 14.846406074726033 0.0 24 0.0 0.0 0.0 15.076149797221504 0.0 25 0.0 0.0 0.0 15.142592113210803 0.0 26 0.0 0.0 0.0 15.478255242039866 0.0 27 0.0 0.0 0.0 15.88855811545431 0.0 28 0.0 0.0 0.0 15.980239882647338 0.0 29 0.0 0.0 0.0 16.099102597290535 0.0 30 0.0 0.0 0.0 16.15109155233411 0.0 31 0.0 0.0 0.0 16.246224868409698 0.0 32 0.0 0.0 0.0 16.360988868754855 0.0 33 0.0 0.0 0.0 16.406074726033307 0.0 34 0.0 0.0 0.0 16.500776598498575 0.0 35 0.0 0.0 0.0 16.55190266632151 0.0 36 0.0 0.0 0.0 16.596772801794806 0.0 37 0.0 0.0 0.0 16.63991716282682 0.0 38 0.0 0.0 0.0 16.67853136595047 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGAAT 25 4.438718E-5 44.0 20 CATGGTA 20 7.851615E-4 44.0 44 CGGAATT 70 0.0 44.0 9 GTGCAAG 40 8.294592E-9 44.0 1 TTAGGCG 35 1.4435864E-7 44.0 4 CGGAAAT 20 7.851615E-4 44.0 21 ACCGGTG 150 0.0 44.0 17 ATTAGTC 25 4.438718E-5 44.0 44 GTACATG 20 7.851615E-4 44.0 41 TGCTTAG 20 7.851615E-4 44.0 1 TTAGCTG 45 4.783942E-10 44.0 5 CGACGGG 20 7.851615E-4 44.0 3 CACATAG 20 7.851615E-4 44.0 34 CGTGAAA 25 4.438718E-5 44.0 20 TGGGTAC 35 1.4435864E-7 44.0 6 CGTTGAA 30 2.5244353E-6 44.0 19 TAGCGGG 70 0.0 44.0 3 TGAACGG 35 1.4435864E-7 44.0 2 GTGATCC 25 4.438718E-5 44.0 3 GTTAGCG 20 7.851615E-4 44.0 1 >>END_MODULE