##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3549113_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 124926 Sequences flagged as poor quality 0 Sequence length 50 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.664353297151912 31.0 31.0 33.0 30.0 34.0 2 32.101179898499915 33.0 31.0 34.0 30.0 34.0 3 32.17645646222564 33.0 31.0 34.0 30.0 34.0 4 35.87591053903911 37.0 35.0 37.0 35.0 37.0 5 35.845012247250374 37.0 35.0 37.0 35.0 37.0 6 35.89685093575397 37.0 35.0 37.0 35.0 37.0 7 36.05014968861566 37.0 35.0 37.0 35.0 37.0 8 35.983670332837036 37.0 35.0 37.0 35.0 37.0 9 37.67642444327041 39.0 38.0 39.0 35.0 39.0 10 37.52769639626659 39.0 37.0 39.0 35.0 39.0 11 37.280886284680534 39.0 37.0 39.0 34.0 39.0 12 36.42477946944591 38.0 35.0 39.0 33.0 39.0 13 36.15085730752605 38.0 35.0 39.0 33.0 39.0 14 37.15826969565983 39.0 35.0 41.0 33.0 41.0 15 37.34299505307142 39.0 35.0 41.0 33.0 41.0 16 37.41980052190897 39.0 35.0 41.0 33.0 41.0 17 37.33584682131822 39.0 35.0 41.0 33.0 41.0 18 37.288434753374 39.0 35.0 41.0 33.0 41.0 19 37.18405295935194 38.0 35.0 41.0 33.0 41.0 20 37.00708419384276 38.0 35.0 41.0 33.0 41.0 21 36.88505995549365 38.0 35.0 41.0 32.0 41.0 22 36.88523605974737 38.0 35.0 41.0 32.0 41.0 23 36.888550021612794 38.0 35.0 41.0 33.0 41.0 24 36.857443606615114 38.0 35.0 41.0 33.0 41.0 25 36.74291180378784 38.0 35.0 41.0 32.0 41.0 26 36.61096969405888 38.0 35.0 41.0 32.0 41.0 27 36.49407649328403 38.0 35.0 41.0 32.0 41.0 28 36.45348446280198 38.0 35.0 41.0 32.0 41.0 29 36.42945423690825 38.0 35.0 41.0 31.0 41.0 30 36.34213054128044 37.0 35.0 40.0 31.0 41.0 31 36.1635848422266 37.0 35.0 40.0 31.0 41.0 32 35.97972399660599 37.0 35.0 40.0 30.0 41.0 33 35.841842370683445 37.0 35.0 40.0 30.0 41.0 34 35.65599634983911 37.0 35.0 40.0 30.0 41.0 35 35.46642012071146 37.0 35.0 40.0 29.0 41.0 36 35.300473880537275 37.0 35.0 40.0 28.0 41.0 37 35.1920416886797 37.0 34.0 40.0 27.0 41.0 38 35.132334341930424 37.0 34.0 40.0 27.0 41.0 39 35.06960120391272 36.0 34.0 40.0 27.0 41.0 40 34.888878215903816 36.0 34.0 40.0 26.0 41.0 41 34.82899476490082 36.0 34.0 40.0 26.0 41.0 42 34.803139458559464 36.0 34.0 40.0 26.0 41.0 43 34.741198789683494 36.0 34.0 40.0 26.0 41.0 44 34.561556441413316 35.0 34.0 40.0 25.0 41.0 45 34.45290812160799 35.0 34.0 40.0 24.0 41.0 46 34.430742999855916 35.0 34.0 40.0 24.0 41.0 47 34.387501400829294 35.0 34.0 40.0 24.0 41.0 48 34.30566895602197 35.0 34.0 40.0 24.0 41.0 49 34.24203128251925 36.0 34.0 40.0 24.0 41.0 50 34.08396971006836 35.0 34.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 3.0 15 7.0 16 7.0 17 24.0 18 37.0 19 100.0 20 172.0 21 265.0 22 437.0 23 585.0 24 833.0 25 1263.0 26 1741.0 27 2116.0 28 2352.0 29 2584.0 30 2705.0 31 3220.0 32 3987.0 33 5442.0 34 10932.0 35 21897.0 36 7248.0 37 9145.0 38 15330.0 39 32494.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.06917695275603 23.17932215871796 28.80505259113395 14.946448297392056 2 30.916702687991293 26.592542785328916 28.513680098618384 13.977074428061412 3 29.015577221715255 24.002209307910285 33.248483101996385 13.73373036837808 4 27.75563133374958 26.552519091302052 31.46742871780094 14.224420857147432 5 22.86553639754735 32.4071850535517 30.336359124601763 14.390919424299184 6 21.050061636488802 40.726510093975634 27.021596785296897 11.201831484238669 7 84.51963562428958 5.262315290652066 8.265693290427933 1.9523557946304213 8 85.50661991899204 4.232105406400589 8.10799993596209 2.153274738645278 9 80.17226197909162 6.623120887565438 9.571266189584234 3.633350943758705 10 51.73782879464643 21.90336679314154 15.077726013800168 11.28107839841186 11 45.88236235851625 19.678849879128443 21.493524166306454 12.94526359604886 12 40.27824472087475 21.53034596481117 24.687414949650194 13.503994364663882 13 21.408673934969503 38.462769959816214 25.29817652050014 14.830379584714152 14 14.823975793669852 40.04530682163841 30.546883755183067 14.58383362950867 15 15.716504170468918 20.954004770824326 48.18772713446361 15.14176392424315 16 17.223796487520612 18.559787394137327 44.343851560123596 19.872564558218464 17 16.85397755471239 18.878375998591164 30.020972415670077 34.24667403102637 18 22.093879576709412 22.551750636376735 34.69573987800778 20.65862990890607 19 29.577509885852425 22.89755535276884 26.98637593455325 20.538558826825483 20 29.335766773930168 22.233162031922898 27.318572594976224 21.11249859917071 21 21.966604229703986 27.219313833789606 29.023581960520627 21.79049997598578 22 22.386853016986056 23.828506475833695 26.666986856218884 27.117653650961373 23 20.11190624849911 28.279941725501494 27.34418775915342 24.26396426684597 24 20.475321390263034 22.592574804284133 39.07513247842723 17.8569713270256 25 18.09151017402302 25.330195475721627 35.16962041528585 21.408673934969503 26 17.058098394249395 32.25349406848855 28.512079150857307 22.17632838640475 27 18.519763700110463 31.335350527512283 30.26271552759233 19.882170244784913 28 15.640459151817875 27.91412516209596 38.04492259417575 18.400493091910413 29 16.773930166658662 24.05664153178682 36.41115540399917 22.758272897555354 30 19.080895890367096 29.14685493812337 31.91089124761859 19.861357923890942 31 28.419224180714984 26.307574083857645 25.376622960792787 19.896578774634584 32 29.01717816947633 25.353409218257205 27.68759105390391 17.94182155836255 33 26.66058306517458 26.79986552038807 25.95536557642124 20.584185838016104 34 19.245793509757778 26.869506747994816 30.280325952964155 23.604373789283255 35 21.90977058418584 24.047836319100906 31.337751949153898 22.704641147559354 36 29.313353505275124 26.60054752413429 25.43825944959416 18.647839520996428 37 20.91798344620015 32.95711060948081 28.329571106094807 17.79533483822423 38 21.708051166290442 33.13641675872117 23.492307446008038 21.663224628980355 39 22.51252741623041 30.82224677008789 26.695803915918226 19.969421897763475 40 23.719642028080624 25.942557994332642 25.888926244336645 24.448873733250085 41 18.422105886684918 25.258152826473275 27.207306725581542 29.112434561260265 42 22.18913596849335 26.285961289083136 24.791476554120038 26.733426188303476 43 22.78228711397147 26.12906840849783 26.182700158493827 24.90594431903687 44 20.546563565630855 29.984951091045897 27.313769751693002 22.154715591630243 45 18.060291692682068 35.80759809807406 23.996605990746524 22.135504218497353 46 22.145109905063798 32.13102156476634 26.000992587611865 19.722875942557994 47 23.1328946736468 26.17309447192738 28.25832893072699 22.43568192369883 48 23.469894177352995 24.19992635640299 30.82064582232682 21.5095336439172 49 21.411075356611114 24.91555000560332 31.75960168419704 21.913772953588527 50 19.806125226133872 32.574484094583994 27.28255127035205 20.336839408930086 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 113.0 1 253.5 2 394.0 3 970.0 4 1546.0 5 1127.0 6 708.0 7 676.0 8 644.0 9 647.0 10 650.0 11 634.0 12 618.0 13 566.0 14 514.0 15 473.5 16 433.0 17 410.5 18 388.0 19 403.0 20 418.0 21 425.5 22 433.0 23 425.5 24 418.0 25 628.0 26 838.0 27 1007.0 28 1176.0 29 1630.5 30 2085.0 31 2006.5 32 1928.0 33 2318.5 34 2709.0 35 2753.5 36 2798.0 37 3276.5 38 3755.0 39 4494.0 40 5233.0 41 7328.0 42 9423.0 43 10703.5 44 11984.0 45 12177.5 46 12371.0 47 11505.5 48 10640.0 49 10656.0 50 10672.0 51 9719.0 52 8766.0 53 8141.5 54 7517.0 55 6984.0 56 6451.0 57 5791.5 58 5132.0 59 4730.0 60 4328.0 61 3789.0 62 3250.0 63 2752.5 64 2255.0 65 1895.0 66 1535.0 67 1267.5 68 1000.0 69 828.5 70 657.0 71 565.5 72 474.0 73 383.5 74 293.0 75 234.0 76 175.0 77 137.0 78 99.0 79 75.0 80 51.0 81 38.0 82 25.0 83 20.0 84 15.0 85 10.0 86 5.0 87 4.5 88 4.0 89 4.0 90 4.0 91 2.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 124926.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.42079310952084 #Duplication Level Percentage of deduplicated Percentage of total 1 66.47819860747617 21.55275923346621 2 8.207002123351934 5.321550357811825 3 4.826922127302356 4.694779309351136 4 3.145523677843069 4.0792148952179685 5 2.53320823663029 4.106431007156237 6 1.943113920300232 3.779837663897027 7 1.6097970470594045 3.653362790772137 8 1.4295590341217719 3.7077950146486716 9 1.2246308824255592 3.5733154027184093 >10 8.557602093723766 43.045482925892124 >50 0.027159152634437803 0.5475241342874982 >100 0.014814083255147893 1.3015705297536142 >500 0.0024690138758579824 0.6363767350271361 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 795 0.6363767350271361 No Hit GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA 490 0.3922322014632663 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 409 0.32739381713974675 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA 341 0.2729615932632118 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCA 154 0.12327297760274082 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.031218481340953844 0.0 2 0.0 0.0 0.0 0.1056625522309207 0.0 3 0.0 0.0 0.0 0.1536909850631574 0.0 4 0.0 0.0 0.0 0.22813505595312425 0.0 5 0.0 0.0 0.0 0.39623457086595265 0.0 6 0.0 0.0 0.0 0.5859468805532876 0.0 7 0.0 0.0 0.0 0.7204264924835503 0.0 8 0.0 0.0 0.0 1.0630293133535054 0.0 9 0.0 0.0 0.0 1.2399340409522437 0.0 10 0.0 0.0 0.0 1.5593231192866177 0.0 11 0.0 0.0 0.0 1.7458335334518034 0.0 12 0.0 0.0 0.0 1.9475529513471976 0.0 13 0.0 0.0 0.0 2.012391335670717 0.0 14 0.0 0.0 0.0 2.0388069737284473 0.0 15 0.0 0.0 0.0 2.0724268767110128 0.0 16 0.0 0.0 0.0 2.162079951331188 0.0 17 0.0 0.0 0.0 2.248531130429214 0.0 18 0.0 0.0 0.0 2.4222339625058034 0.0 19 0.0 0.0 0.0 2.4694619214575027 0.0 20 0.0 0.0 0.0 2.5270960408561867 0.0 21 0.0 0.0 0.0 2.6015401117461536 0.0 22 0.0 0.0 0.0 2.6711813393528967 0.0 23 0.0 0.0 0.0 2.7536301490482367 0.0 24 0.0 0.0 0.0 2.8112642684469207 0.0 25 0.0 0.0 0.0 2.869698861726142 0.0 26 0.0 0.0 0.0 2.920929190080528 0.0 27 0.0 0.0 0.0 2.9721595184349137 0.0 28 0.0 0.0 0.0 3.0297936378335977 0.0 29 0.0 0.0 0.0 3.073819701263148 0.0 30 0.0 0.0 0.0 3.151465667675264 0.0 31 0.0 0.0 0.0 3.2315130557289917 0.0 32 0.0 0.0 0.0 3.3003538094551974 0.0 33 0.0 0.0 0.0 3.3763988281062387 0.0 34 0.0 0.0 0.0 3.446040055712982 0.0 35 0.0 0.0 0.0 3.53489265645262 0.0 36 0.0 0.0 0.0 3.6037334101788256 0.0 37 0.0 0.0 0.0 3.673374637785569 0.0 38 0.0 0.0 0.0 3.7510206041976852 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGGACCG 75 0.0 44.000004 7 TAAGGGT 45 4.7293724E-10 44.000004 4 TAAGGGC 45 4.7293724E-10 44.000004 4 ATACATC 130 0.0 44.000004 23 GTTGAAG 20 7.829527E-4 44.0 1 CTATGCT 20 7.829527E-4 44.0 36 TAATAGG 25 4.4200176E-5 44.0 2 CGGCGCA 30 2.5095687E-6 44.0 22 GATACAT 125 0.0 44.0 22 ACACGGG 20 7.829527E-4 44.0 3 ATAGGGT 25 4.4200176E-5 44.0 4 TCACAGG 20 7.829527E-4 44.0 2 ACACCGG 30 2.5095687E-6 44.0 18 CATGAGG 20 7.829527E-4 44.0 2 TATGGCC 30 2.5095687E-6 44.0 10 ATAGCGG 30 2.5095687E-6 44.0 2 CACGCCA 30 2.5095687E-6 44.0 27 CAATTGG 25 4.4200176E-5 44.0 2 ACGGGTA 30 2.5095687E-6 44.0 5 ACGGGCG 20 7.829527E-4 44.0 5 >>END_MODULE