SRR3549112_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549112_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2717657
Sequences flagged as poor quality	0
Sequence length	50
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	23093	0.8497393158886497	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	7105	0.2614384375953257	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	6352	0.23373074674250652	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATA	6266	0.2305662561537383	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	4914	0.18081752038612672	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACG	25	4.444449E-5	44.0	21
TACGACA	30	2.5289974E-6	44.0	23
TACGAAC	25	4.444449E-5	44.0	12
CGTACGT	35	1.4470606E-7	44.0	27
ATTGCGA	20	7.85838E-4	44.0	10
ATTTCGA	45	4.802132E-10	44.0	13
TCGTAAG	180	0.0	42.77778	1
TATAGCG	240	0.0	41.25	1
CGTAAGG	365	0.0	40.9863	2
CGTTTTT	13285	0.0	40.803913	1
TAGTGCG	180	0.0	40.333332	1
ACAATCG	55	7.8216544E-11	40.0	37
CTATTCG	50	1.3496901E-9	39.600002	42
CAATACG	50	1.3496901E-9	39.600002	1
CGACGGT	380	0.0	39.36842	28
CGTATGT	45	2.3530447E-8	39.11111	23
ATCGCTA	45	2.3530447E-8	39.11111	40
CCGTTCG	45	2.3530447E-8	39.11111	42
CGTATGG	130	0.0	38.92308	2
CGGTCTA	380	0.0	38.789474	31