SRR3549108_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549108_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	343920
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	954	0.2773900907187718	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	800	0.23261223540358222	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	775	0.22534310304722027	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTCG	20	7.026384E-4	45.000004	35
AGGTAGT	20	7.026384E-4	45.000004	7
AGGTAAT	30	2.1610485E-6	45.000004	7
CGACGCT	20	7.026384E-4	45.000004	12
CCTAGGA	20	7.026384E-4	45.000004	4
CCCTAGA	30	2.1610485E-6	45.000004	37
CGACCGT	20	7.026384E-4	45.000004	26
CGATTGT	20	7.026384E-4	45.000004	10
CGCGAGG	30	2.1610485E-6	45.000004	3
GCGTTAT	20	7.026384E-4	45.000004	44
AGACGAG	20	7.026384E-4	45.000004	2
ATATCGA	20	7.026384E-4	45.000004	10
TTAACGT	20	7.026384E-4	45.000004	15
GTGAGTC	20	7.026384E-4	45.000004	18
ATACGCA	20	7.026384E-4	45.000004	25
CGACTAG	20	7.026384E-4	45.000004	2
TAGTGCA	30	2.1610485E-6	45.000004	1
GCGTATA	20	7.026384E-4	45.000004	1
AATACGC	20	7.026384E-4	45.000004	24
TCAACGT	20	7.026384E-4	45.000004	33