SRR3549104_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549104_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	370559
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	993	0.26797352108571104	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	984	0.2655447580547228	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	854	0.23046262538489148	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAG	20	7.0270913E-4	45.000004	2
TCGTTAA	20	7.0270913E-4	45.000004	1
ATCTCCG	20	7.0270913E-4	45.000004	20
TCCGCTT	20	7.0270913E-4	45.000004	23
GGCGTAA	20	7.0270913E-4	45.000004	1
TGTATAG	90	0.0	45.000004	2
CGATTCG	20	7.0270913E-4	45.000004	10
ACGGGTG	20	7.0270913E-4	45.000004	5
CGTTCAC	45	3.8380676E-10	45.000004	21
TATGAAC	20	7.0270913E-4	45.000004	27
CGTTAAG	45	3.8380676E-10	45.000004	2
ACTAGGT	20	7.0270913E-4	45.000004	4
ATATCAC	45	3.8380676E-10	45.000004	30
TCGTGCG	20	7.0270913E-4	45.000004	45
TCGCTAT	20	7.0270913E-4	45.000004	23
GTCAATC	20	7.0270913E-4	45.000004	18
GCTAGGC	40	6.7939254E-9	45.000004	4
ACGCTAG	20	7.0270913E-4	45.000004	2
TTAACGA	20	7.0270913E-4	45.000004	12
GCCTAGT	20	7.0270913E-4	45.000004	25