SRR3549090_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549090_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299798
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	871	0.29052895616381696	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	737	0.2458321936770759	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	714	0.2381603613099487	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGTAC	65	0.0	45.000004	6
TAGGCGA	65	0.0	45.000004	6
CGGGTAA	20	7.0249353E-4	45.0	28
CATGCCG	20	7.0249353E-4	45.0	12
AACCCGG	25	3.883884E-5	45.0	38
CACGCTC	20	7.0249353E-4	45.0	25
GTTAGGC	40	6.7866495E-9	45.0	4
TGAGTTA	25	3.883884E-5	45.0	1
CACTGTA	20	7.0249353E-4	45.0	43
AGGCGAT	215	0.0	45.0	7
GCGTTCG	25	3.883884E-5	45.0	44
CGTTCGG	25	3.883884E-5	45.0	45
CAGGGTT	20	7.0249353E-4	45.0	45
AACATAG	20	7.0249353E-4	45.0	2
CAAGGCA	20	7.0249353E-4	45.0	5
CGAATAC	20	7.0249353E-4	45.0	40
ACGCTCA	20	7.0249353E-4	45.0	26
GCGATAT	25	3.883884E-5	45.0	9
GTATCAC	20	7.0249353E-4	45.0	9
CGATGTT	20	7.0249353E-4	45.0	10