SRR3549087_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549087_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2593226
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	11599	0.4472807229296637	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6894	0.26584647847892934	No Hit
ATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG	6418	0.24749096299358403	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	4797	0.1849819491243725	No Hit
ATGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	4501	0.17356759495701493	No Hit
ATGCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	4392	0.16936433615890015	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3702	0.14275655110661392	No Hit
ATTGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	3492	0.1346585295689616	No Hit
ATGTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	3294	0.12702325211917512	No Hit
ATATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	3075	0.1185781725156234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATTGCG	30	2.16656E-6	45.000004	3
ACCGAAC	30	2.16656E-6	45.000004	13
CTAACCG	60	0.0	45.000004	23
GTTCGAA	60	0.0	45.000004	39
TCTAACG	30	2.16656E-6	45.000004	41
CGTAATC	30	2.16656E-6	45.000004	36
ACCGTAT	30	2.16656E-6	45.000004	15
ACACTCG	30	2.16656E-6	45.000004	33
CGTCCTA	30	2.16656E-6	45.000004	23
TCGACGA	30	2.16656E-6	45.000004	30
GTACGAC	30	2.16656E-6	45.000004	11
CTTACGT	30	2.16656E-6	45.000004	22
AACCGTA	45	3.8562575E-10	45.0	38
CGAGTTA	25	3.8921666E-5	45.0	17
CGTATAC	35	1.2127202E-7	45.0	19
GTCGAAC	20	7.034929E-4	45.0	17
TCCGATT	20	7.034929E-4	45.0	32
ACGTTCA	45	3.8562575E-10	45.0	19
GCGTTTC	40	6.8212103E-9	45.0	27
CGACACG	50	2.1827873E-11	45.0	3