SRR3549086_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549086_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2094663
Sequences flagged as poor quality	0
Sequence length	52
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCTT	10551	0.5037087111387369	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	6806	0.3249210016121925	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	6472	0.308975715902749	No Hit
GTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	6175	0.294796824119202	No Hit
TGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	6098	0.2911208151382824	No Hit
TTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	5473	0.2612830799035453	No Hit
ATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	4413	0.2106782809454313	No Hit
GGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3842	0.18341852603497555	No Hit
AGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3227	0.1540581945639943	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	2831	0.1351530055192649	No Hit
ACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	2588	0.12355209405999915	No Hit
TCCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	2276	0.1086570966308184	No Hit
CTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	2095	0.10001608850683857	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTA	40	5.6152203E-9	46.000004	36
CGGAACC	40	5.6152203E-9	46.000004	37
AACCGAT	40	5.6152203E-9	46.000004	23
TCGCAAA	20	6.3126476E-4	46.000004	20
GCGAATC	35	1.02010745E-7	46.000004	18
CCCTATA	20	6.3126476E-4	46.000004	42
CTATCGT	20	6.3126476E-4	46.000004	22
GCAACGC	40	5.6152203E-9	46.000004	25
TAACGGA	40	5.6152203E-9	46.000004	29
CGACACG	40	5.6152203E-9	46.000004	1
TCGATAG	40	5.6152203E-9	46.000004	35
CCGTCGA	40	5.6152203E-9	46.000004	43
CCCGTTA	20	6.3126476E-4	46.000004	37
AATGCGT	40	5.6152203E-9	46.000004	41
TACGCTT	35	1.02010745E-7	46.000004	27
CTAACGG	35	1.02010745E-7	46.000004	2
CTAACGA	40	5.6152203E-9	46.000004	21
CGGATTA	35	1.02010745E-7	46.000004	26
CTCGGTT	40	5.6152203E-9	46.000004	21
TCTAACG	20	6.3126476E-4	46.000004	39