SRR3549083_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549083_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1569551
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	9434	0.6010636162826184	TruSeq Adapter, Index 15 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5080	0.3236594414580985	No Hit
ATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	4304	0.2742185504007197	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT	3644	0.23216830800655727	TruSeq Adapter, Index 15 (95% over 22bp)
ATGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT	3182	0.2027331383306436	No Hit
ATTGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	3001	0.19120117791648694	No Hit
ATATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2763	0.17603760565919807	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	2725	0.17361653109710995	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2558	0.16297654552161733	TruSeq Adapter, Index 14 (95% over 21bp)
ATGTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2546	0.16221199565990527	No Hit
ATGCCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2494	0.1588989462591531	No Hit
ATGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2307	0.1469847109141404	No Hit
ATTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	2058	0.13112030128361551	No Hit
ATAGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	1908	0.12156342801221495	No Hit
ATAGCATTCCCACGAATAAATAATATAAGTTTTTGACTCCTACCACCATCA	1767	0.11257996713709845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTGA	40	6.8175723E-9	45.000004	18
CTTAACG	40	6.8175723E-9	45.000004	3
CTAGACG	20	7.0340745E-4	45.000004	28
TTAGGCG	35	1.2123019E-7	45.000004	6
AGATCGC	35	1.2123019E-7	45.000004	22
CGAACCG	20	7.0340745E-4	45.000004	3
GATCGCC	35	1.2123019E-7	45.000004	23
CGCGGTC	20	7.0340745E-4	45.000004	43
CGAGTAG	75	0.0	45.000004	3
CGTGCAT	20	7.0340745E-4	45.000004	43
GCAACGC	35	1.2123019E-7	45.000004	11
GACGTGC	20	7.0340745E-4	45.000004	41
GACGTAC	35	1.2123019E-7	45.000004	29
CGGCACG	20	7.0340745E-4	45.000004	33
CCGGATA	75	0.0	45.000004	22
CGCGCAC	20	7.0340745E-4	45.000004	27
GCCGGAC	20	7.0340745E-4	45.000004	25
CGCGATG	35	1.2123019E-7	45.000004	3
CACGACA	20	7.0340745E-4	45.000004	25
ACGGGTC	40	6.8175723E-9	45.000004	7