SRR3549073_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3549073_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1853500
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGC	4762	0.2569193417858106	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3863	0.208416509306717	No Hit
ATCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTG	2726	0.1470731049366064	No Hit
GCCCTGCTAGAGGACTTGCGTCTGTATCTATGCTCTGCCCCATGCAGCTCC	2370	0.1278661990828163	No Hit
ATGCCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTC	2158	0.1164283787429188	No Hit
ATGCTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCT	1875	0.10115996762881035	No Hit
CTGTCTCTTATACACATCTGACGCAGCAAGCGTCGTATGCCGTCTTCTGCT	1863	0.10051254383598596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAG	45	3.8562575E-10	45.000004	3
AACGTCC	25	3.8917336E-5	45.0	43
GTACCTA	25	3.8917336E-5	45.0	21
ACCTCGT	25	3.8917336E-5	45.0	45
CGTTAGT	25	3.8917336E-5	45.0	14
AACGGTT	25	3.8917336E-5	45.0	40
TACGCTA	20	7.0344075E-4	45.0	2
CATCGAA	40	6.8193913E-9	45.0	32
CAGTCGA	35	1.2124656E-7	45.0	13
TTCGCAT	55	1.8189894E-12	45.0	2
CAATCGA	35	1.2124656E-7	45.0	23
TTCGATC	35	1.2124656E-7	45.0	19
TCGGTAA	20	7.0344075E-4	45.0	2
TAGTCGA	20	7.0344075E-4	45.0	1
AGTCGAC	40	6.8193913E-9	45.0	35
TAATCGC	30	2.1662254E-6	44.999996	16
ACAACGA	85	0.0	42.35294	15
AGTACGA	85	0.0	42.35294	36
ATTCGCA	70	0.0	41.785713	1
CGTACAT	70	0.0	41.785713	36